Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_C18
(813 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93387-2|CAB07650.1| 763|Caenorhabditis elegans Hypothetical pr... 28 9.1
Z49907-11|CAF31469.1| 844|Caenorhabditis elegans Hypothetical p... 28 9.1
Z49907-10|CAC42250.1| 875|Caenorhabditis elegans Hypothetical p... 28 9.1
Z49907-9|CAA90092.1| 880|Caenorhabditis elegans Hypothetical pr... 28 9.1
Z48367-8|CAF31471.1| 844|Caenorhabditis elegans Hypothetical pr... 28 9.1
Z48367-7|CAC42266.1| 875|Caenorhabditis elegans Hypothetical pr... 28 9.1
Z48367-6|CAA88325.1| 880|Caenorhabditis elegans Hypothetical pr... 28 9.1
AF319613-1|AAG49523.1| 880|Caenorhabditis elegans CLC-type chlo... 28 9.1
AF173171-1|AAF13164.1| 844|Caenorhabditis elegans CLC chloride ... 28 9.1
>Z93387-2|CAB07650.1| 763|Caenorhabditis elegans Hypothetical
protein T02E9.3 protein.
Length = 763
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = -3
Query: 436 FGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRV 257
FG L H G LP + S+ + ++++G + R+SGGSK+ +
Sbjct: 212 FGQLTHRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSGSPTRRQSGGSKERSPSQPD 271
Query: 256 SH--SKRETRRRSP 221
H +K + R RSP
Sbjct: 272 IHIVAKPQQRWRSP 285
>Z49907-11|CAF31469.1| 844|Caenorhabditis elegans Hypothetical
protein B0491.8c protein.
Length = 844
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +3
Query: 624 RRYERLAATSQLSLVVTFLAPLAKTLYTKGSIGRAFAVPMRTEIWXXQLLPFCSXEXF 797
R E L++ + + TF AP+ LY S + FAV W L CS F
Sbjct: 200 REMEMLSSGCAVGIACTFSAPIGAVLYAIESTSKYFAV---KNYWRGFLAATCSAIVF 254
>Z49907-10|CAC42250.1| 875|Caenorhabditis elegans Hypothetical
protein B0491.8b protein.
Length = 875
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +3
Query: 624 RRYERLAATSQLSLVVTFLAPLAKTLYTKGSIGRAFAVPMRTEIWXXQLLPFCSXEXF 797
R E L++ + + TF AP+ LY S + FAV W L CS F
Sbjct: 231 REMEMLSSGCAVGIACTFSAPIGAVLYAIESTSKYFAV---KNYWRGFLAATCSAIVF 285
>Z49907-9|CAA90092.1| 880|Caenorhabditis elegans Hypothetical
protein B0491.8a protein.
Length = 880
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +3
Query: 624 RRYERLAATSQLSLVVTFLAPLAKTLYTKGSIGRAFAVPMRTEIWXXQLLPFCSXEXF 797
R E L++ + + TF AP+ LY S + FAV W L CS F
Sbjct: 231 REMEMLSSGCAVGIACTFSAPIGAVLYAIESTSKYFAV---KNYWRGFLAATCSAIVF 285
>Z48367-8|CAF31471.1| 844|Caenorhabditis elegans Hypothetical
protein B0491.8c protein.
Length = 844
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +3
Query: 624 RRYERLAATSQLSLVVTFLAPLAKTLYTKGSIGRAFAVPMRTEIWXXQLLPFCSXEXF 797
R E L++ + + TF AP+ LY S + FAV W L CS F
Sbjct: 200 REMEMLSSGCAVGIACTFSAPIGAVLYAIESTSKYFAV---KNYWRGFLAATCSAIVF 254
>Z48367-7|CAC42266.1| 875|Caenorhabditis elegans Hypothetical
protein B0491.8b protein.
Length = 875
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +3
Query: 624 RRYERLAATSQLSLVVTFLAPLAKTLYTKGSIGRAFAVPMRTEIWXXQLLPFCSXEXF 797
R E L++ + + TF AP+ LY S + FAV W L CS F
Sbjct: 231 REMEMLSSGCAVGIACTFSAPIGAVLYAIESTSKYFAV---KNYWRGFLAATCSAIVF 285
>Z48367-6|CAA88325.1| 880|Caenorhabditis elegans Hypothetical
protein B0491.8a protein.
Length = 880
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +3
Query: 624 RRYERLAATSQLSLVVTFLAPLAKTLYTKGSIGRAFAVPMRTEIWXXQLLPFCSXEXF 797
R E L++ + + TF AP+ LY S + FAV W L CS F
Sbjct: 231 REMEMLSSGCAVGIACTFSAPIGAVLYAIESTSKYFAV---KNYWRGFLAATCSAIVF 285
>AF319613-1|AAG49523.1| 880|Caenorhabditis elegans CLC-type
chloride channel CLH-2b protein.
Length = 880
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +3
Query: 624 RRYERLAATSQLSLVVTFLAPLAKTLYTKGSIGRAFAVPMRTEIWXXQLLPFCSXEXF 797
R E L++ + + TF AP+ LY S + FAV W L CS F
Sbjct: 231 REMEMLSSGCAVGIACTFSAPIGAVLYAIESTSKYFAV---KNYWRGFLAATCSAIVF 285
>AF173171-1|AAF13164.1| 844|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 844
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +3
Query: 624 RRYERLAATSQLSLVVTFLAPLAKTLYTKGSIGRAFAVPMRTEIWXXQLLPFCSXEXF 797
R E L++ + + TF AP+ LY S + FAV W L CS F
Sbjct: 200 REMEMLSSGCAVGIACTFSAPIGAVLYAIESTSKYFAV---KNYWRGFLAATCSAIVF 254
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,819,586
Number of Sequences: 27780
Number of extensions: 402069
Number of successful extensions: 1174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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