Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_C16
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    35   0.012
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    29   0.80 
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   5.6  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    26   5.6  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   9.8  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   9.8  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   9.8  

>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 35.1 bits (77), Expect = 0.012
 Identities = 33/130 (25%), Positives = 55/130 (42%)
 Frame = +3

Query: 162 TLTPDVRSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADGAFEANRRL*NVGRLGTAARR 341
           T+TP+    P S     + + + N  +RR G+ + R    +  +N+R  N  R   A+R 
Sbjct: 149 TITPNFTHTPISNR---KSSRSRNDGSRRNGNGRRRGNYSSHGSNKRQTNYSREKDASRS 205

Query: 342 AAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSGRPLTFTG 521
              + P        D N   GS   + + G+    T+   S+  APH  + SG   +  G
Sbjct: 206 IDSSNPSAEYRD--DINNTFGSQTVSSANGKEVPQTSED-SSSQAPHHSSSSGHAPSQQG 262

Query: 522 GEAATYRGRD 551
           G   +Y+  D
Sbjct: 263 GNKHSYKKSD 272


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +3

Query: 399 AGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSG---RPLTFTGGEAATYRGRDV 554
           A S R TP+  RS  STA R    +   G   +G    P T +  ++ + RG+ V
Sbjct: 142 ASSARQTPAPSRSGASTAGRRRTSATTRGAIQNGVYHSPYTASLADSGSTRGQKV 196


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +3

Query: 399  AGSGRDTPSTGRSNHSTAAR*SAGSA-PHGLTPSGRPLTFTGGEAAT 536
            +G GR  P     N  +    SA +A P+GL P   PLT    +  T
Sbjct: 862  SGMGRAAPGMFMGNVGSFENLSANAASPYGLPPQQTPLTNAATQQTT 908


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 426 STVYRVPTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGRRFRAFDS 292
           STV  +P+    +    ++   +  S RPD LP   G R++ F S
Sbjct: 138 STVPTIPSVSKEANDKYFAKLGSINSQRPDDLPPSQGGRYQGFGS 182


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 348 QTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHST 449
           QT P++  N P+  N PA +  +TP+   +   T
Sbjct: 662 QTAPMIQPNVPVSANSPAQA--NTPAADSTKSGT 693


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +3

Query: 363 VSRNTPLDQNQPAGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSGRPLTFTGGEAAT 536
           VS +TPL       S   T +T  S  S++A+ +  S     TPS  PL+      AT
Sbjct: 249 VSSSTPL-----TSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTAT 301


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 393 GSGPAGYSGTPAAPSGRPDGLPYRDGRR 310
           G  P     TP APS    G P+ +G++
Sbjct: 95  GDSPDSLVSTPTAPSANHHGNPFPNGKQ 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,838
Number of Sequences: 5004
Number of extensions: 52000
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)