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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_C16
         (823 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    37   0.015
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    37   0.015
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    37   0.015
Z70682-4|CAA94581.1|  299|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z22177-7|CAA80149.1|  171|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z81050-3|CAB02849.1|  291|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    30   2.3  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    30   2.3  
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1...    30   2.3  
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1...    30   2.3  
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.      30   2.3  
AL021448-3|CAA16275.1|  291|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z74037-4|CAA98490.1|  295|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z66498-3|CAA91293.2|  687|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U50191-3|AAK31557.1|  380|Caenorhabditis elegans Dumpy : shorter...    29   4.0  
L12706-1|AAA17398.2|  360|Caenorhabditis elegans collagen protein.     29   4.0  
AF099925-3|AAC69507.1|  394|Caenorhabditis elegans Collagen prot...    29   4.0  
L11247-3|AAA28008.1|  278|Caenorhabditis elegans Collagen protei...    29   5.3  
AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen pro...    29   5.3  
Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical pr...    28   9.3  
Z70756-6|CAA94792.1|  290|Caenorhabditis elegans Hypothetical pr...    28   9.3  
U80451-2|AAB37837.1|  223|Caenorhabditis elegans Hypothetical pr...    28   9.3  
U41014-1|AAK32947.3|  641|Caenorhabditis elegans Hypothetical pr...    28   9.3  
AC024775-6|AAK68452.2|  304|Caenorhabditis elegans Collagen prot...    28   9.3  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 3/152 (1%)
 Frame = +3

Query: 135 SPPTKRLLCTLTPDVRSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADGAFEANRRL*NV 314
           SPPT     T +P    PPR  PG     ++  +    RG P+G P  G  +++      
Sbjct: 343 SPPTGSPP-TGSPPTGRPPRGGPGKSSEESS-ESREGPRGGPRGGPRGGPRKSSEESSES 400

Query: 315 GRLGTAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTG---RSNHSTAAR*SAGSAPHG 485
                  RR+  T    + + P  +         +P TG   R           GS P G
Sbjct: 401 REEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGLPSRQKRQAPEDRPTGSPPTG 460

Query: 486 LTPSGRPLTFTGGEAATYRGRDVRAYSRLXPP 581
             P+GRP     G++ +   R+     R  PP
Sbjct: 461 SPPTGRPHRGGPGKSESSESREGPRGPRRSPP 492



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 396 PAGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSGRP 506
           PAG+G   P   +   +       GS P G  P+GRP
Sbjct: 323 PAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRP 359


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 3/152 (1%)
 Frame = +3

Query: 135 SPPTKRLLCTLTPDVRSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADGAFEANRRL*NV 314
           SPPT     T +P    PPR  PG     ++  +    RG P+G P  G  +++      
Sbjct: 364 SPPTGSPP-TGSPPTGRPPRGGPGKSSEESS-ESREGPRGGPRGGPRGGPRKSSEESSES 421

Query: 315 GRLGTAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTG---RSNHSTAAR*SAGSAPHG 485
                  RR+  T    + + P  +         +P TG   R           GS P G
Sbjct: 422 REEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGLPSRQKRQAPEDRPTGSPPTG 481

Query: 486 LTPSGRPLTFTGGEAATYRGRDVRAYSRLXPP 581
             P+GRP     G++ +   R+     R  PP
Sbjct: 482 SPPTGRPHRGGPGKSESSESREGPRGPRRSPP 513



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 396 PAGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSGRP 506
           PAG+G   P   +   +       GS P G  P+GRP
Sbjct: 344 PAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRP 380


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 3/152 (1%)
 Frame = +3

Query: 135 SPPTKRLLCTLTPDVRSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADGAFEANRRL*NV 314
           SPPT     T +P    PPR  PG     ++  +    RG P+G P  G  +++      
Sbjct: 349 SPPTGSPP-TGSPPTGRPPRGGPGKSSEESS-ESREGPRGGPRGGPRGGPRKSSEESSES 406

Query: 315 GRLGTAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTG---RSNHSTAAR*SAGSAPHG 485
                  RR+  T    + + P  +         +P TG   R           GS P G
Sbjct: 407 REEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGLPSRQKRQAPEDRPTGSPPTG 466

Query: 486 LTPSGRPLTFTGGEAATYRGRDVRAYSRLXPP 581
             P+GRP     G++ +   R+     R  PP
Sbjct: 467 SPPTGRPHRGGPGKSESSESREGPRGPRRSPP 498



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 396 PAGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSGRP 506
           PAG+G   P   +   +       GS P G  P+GRP
Sbjct: 329 PAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRP 365


>Z70682-4|CAA94581.1|  299|Caenorhabditis elegans Hypothetical
           protein F08G5.4 protein.
          Length = 299

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -2

Query: 390 SGPAGYSGTPAAPSGRPDGLPYRDG 316
           +GPAG  G P AP   PDG P +DG
Sbjct: 144 AGPAGPDGAPGAPG--PDGQPGQDG 166


>Z22177-7|CAA80149.1|  171|Caenorhabditis elegans Hypothetical
           protein ZK512.8 protein.
          Length = 171

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = +1

Query: 157 SALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSKTSAVSVRQ- 333
           S  L   S+P   +  DE+  L R  +  D   HP + +  +P  + E S TSA S    
Sbjct: 46  STHLSLASNPTEFKFMDEIALLKRGRIDKDAPKHPYNRRGQQPMMKKEISVTSAHSNSSL 105

Query: 334 PVGPPRRCRWCPGIP 378
           PV  P       G+P
Sbjct: 106 PVRSPAIMTLMGGVP 120


>Z81050-3|CAB02849.1|  291|Caenorhabditis elegans Hypothetical
           protein C50B6.4 protein.
          Length = 291

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = -2

Query: 390 SGPAGYSGTPAAP--SGRPDGLPYRDGRR 310
           +GPAG +G P AP   G+P G P +DG+R
Sbjct: 171 AGPAGDAGAPGAPGQDGQP-GAPGQDGQR 198


>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
            K04H4.1b protein.
          Length = 1502

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = -2

Query: 411  VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 316
            VP +Q  SG  GY G P  P  +     DG P RDG
Sbjct: 1129 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1164


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
            K04H4.1a protein.
          Length = 1759

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = -2

Query: 411  VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 316
            VP +Q  SG  GY G P  P  +     DG P RDG
Sbjct: 1386 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1421


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
            protein.
          Length = 1758

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = -2

Query: 411  VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 316
            VP +Q  SG  GY G P  P  +     DG P RDG
Sbjct: 1385 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1420


>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
            isoform a protein.
          Length = 1409

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 152  SFSGWALKSLGPRSAHNTMQIVESHIPRAPLLRG 51
            S++GW   S+ P+SA++ M ++E  + R   L G
Sbjct: 1302 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1335


>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
            isoform b protein.
          Length = 1444

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 152  SFSGWALKSLGPRSAHNTMQIVESHIPRAPLLRG 51
            S++GW   S+ P+SA++ M ++E  + R   L G
Sbjct: 1337 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1370


>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
          Length = 1409

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 152  SFSGWALKSLGPRSAHNTMQIVESHIPRAPLLRG 51
            S++GW   S+ P+SA++ M ++E  + R   L G
Sbjct: 1302 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1335


>AL021448-3|CAA16275.1|  291|Caenorhabditis elegans Hypothetical
           protein Y2H9A.3 protein.
          Length = 291

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -2

Query: 390 SGPAGYSGTPAAP--SGRPDGLPYRDGRR 310
           +GPAG +G P AP   G+P G P +DG R
Sbjct: 171 AGPAGDAGAPGAPGQDGQP-GAPGQDGHR 198


>Z74037-4|CAA98490.1|  295|Caenorhabditis elegans Hypothetical
           protein F57B7.3 protein.
          Length = 295

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 390 SGPAGYSGTPAAPSGR-PDGLPYRDGRRFR 304
           +GP G +GTP  P  +  DG P ++GRR R
Sbjct: 173 AGPQGDAGTPGQPGQQGQDGRPGQNGRRGR 202



 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -2

Query: 426 STVYRVPTRQAGSGPAGYSGTPAAPSGRPDGLPYRDG 316
           ST   +P      GP G  G P AP   P G P +DG
Sbjct: 128 STSECIPCPAGAPGPQGPDGAPGAPG--PSGQPGQDG 162


>Z66498-3|CAA91293.2|  687|Caenorhabditis elegans Hypothetical
           protein M195.3 protein.
          Length = 687

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 324 GTAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTA 452
           GT A + +      ++ TPL  +    + R+ PSTGR   STA
Sbjct: 529 GTGAPKRSNGPAFNNQITPLAVSSTVSTARNGPSTGRRTESTA 571


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
 Frame = +3

Query: 327 TAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAAR*SAGSAPHG-----LT 491
           TA   ++ TVP  S   P  Q+    +G  TPS   S   + +   + S P G     +T
Sbjct: 374 TATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTIT 433

Query: 492 PSGRPLTF-TGGEAATY 539
           P G   +  TG   +T+
Sbjct: 434 PEGSTASSPTGSTGSTF 450


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
 Frame = +3

Query: 327 TAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAAR*SAGSAPHG-----LT 491
           TA   ++ TVP  S   P  Q+    +G  TPS   S   + +   + S P G     +T
Sbjct: 581 TATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTIT 640

Query: 492 PSGRPLTF-TGGEAATY 539
           P G   +  TG   +T+
Sbjct: 641 PEGSTASSPTGSTGSTF 657


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
 Frame = +3

Query: 327 TAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAAR*SAGSAPHG-----LT 491
           TA   ++ TVP  S   P  Q+    +G  TPS   S   + +   + S P G     +T
Sbjct: 581 TATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTIT 640

Query: 492 PSGRPLTF-TGGEAATY 539
           P G   +  TG   +T+
Sbjct: 641 PEGSTASSPTGSTGSTF 657


>U50191-3|AAK31557.1|  380|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 2 protein.
          Length = 380

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -2

Query: 387 GPAGYSGTPAAPSG-RPDGLPYRDG 316
           GP+G SG PA P    PDG P R G
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPG 150


>L12706-1|AAA17398.2|  360|Caenorhabditis elegans collagen protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -2

Query: 387 GPAGYSGTPAAPSG-RPDGLPYRDG 316
           GP+G SG PA P    PDG P R G
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPG 150


>AF099925-3|AAC69507.1|  394|Caenorhabditis elegans Collagen protein
           69 protein.
          Length = 394

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -2

Query: 387 GPAGYSGTPAAPSGRP-DGLPYRDGRRFRAFD 295
           GP GY G P  P  R  DG P  +G    A+D
Sbjct: 144 GPTGYPGAPGEPGSRGLDGRPGANGVTLIAYD 175


>L11247-3|AAA28008.1|  278|Caenorhabditis elegans Collagen protein
           91 protein.
          Length = 278

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = -2

Query: 387 GPAGYSGTPAAPSGRP--DGLPYRDGRR 310
           GPAG +G P AP G P  DG P ++G+R
Sbjct: 173 GPAGDAGAPGAP-GAPGNDGQPGQNGQR 199


>AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen
           protein 142 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -2

Query: 387 GPAGYSGTPAAPSGRP--DGLPYRDGRRFRAFDSP 289
           GPAG +G+P  P G P   G P R G+R R    P
Sbjct: 173 GPAGDAGSPGQP-GHPGSPGNPGRGGQRSRGLPGP 206


>Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical
           protein F25D7.4 protein.
          Length = 932

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/62 (29%), Positives = 24/62 (38%)
 Frame = +3

Query: 327 TAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSGRP 506
           T A R    VP VS    L    PAG  R T +   +  +  A     +AP    P+ + 
Sbjct: 307 TGAARTRPAVPAVSAPRALTSRAPAGPARPTTTRSATPATRTAVPPRATAPPKAAPASKA 366

Query: 507 LT 512
            T
Sbjct: 367 PT 368


>Z70756-6|CAA94792.1|  290|Caenorhabditis elegans Hypothetical
           protein T06E4.6 protein.
          Length = 290

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 408 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGR 313
           P +  G+G  G +G P AP G   G P +DG+
Sbjct: 219 PGQSGGAGAPGPAGAPGAPGG--PGQPGQDGQ 248


>U80451-2|AAB37837.1|  223|Caenorhabditis elegans Hypothetical
           protein F11G11.5 protein.
          Length = 223

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 12/71 (16%)
 Frame = +1

Query: 172 PTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRR------------IEGSKTS 315
           P   PL    P + G +  S+ QP   + P+  QPT PSR             I+ S   
Sbjct: 7   PVKQPLPDSPPTDEG-MSSSSAQPSAPSAPEQ-QPTSPSRPPPPAGFVYPSTDIQNSSEV 64

Query: 316 AVSVRQPVGPP 348
            VS   P GPP
Sbjct: 65  HVSAPVPAGPP 75


>U41014-1|AAK32947.3|  641|Caenorhabditis elegans Hypothetical
           protein C06G1.4 protein.
          Length = 641

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 503 PLDLHRGGGRHLQGPGRTGVFPPXAPGSTATDRCGKGK 616
           P+D+H GGG  + G    GV P    GS   +  G G+
Sbjct: 255 PMDMHMGGG--MGGMRNMGVAPNSGHGSWKNNNAGGGQ 290


>AC024775-6|AAK68452.2|  304|Caenorhabditis elegans Collagen protein
           108 protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -2

Query: 408 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGR 313
           P      GPAG +G P AP G P G P  DG+
Sbjct: 185 PGAAGDKGPAGPNGNPGAP-GSP-GKPGEDGK 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,972,804
Number of Sequences: 27780
Number of extensions: 352233
Number of successful extensions: 1558
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1546
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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