Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_C12
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   206   2e-54
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   206   2e-54
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.79 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.4  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.2  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   7.4  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    26   7.4  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   9.7  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  206 bits (504), Expect = 2e-54
 Identities = 101/161 (62%), Positives = 120/161 (74%)
 Frame = -3

Query: 588 GTQRSYPVRHXKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 409
           GT+R  P +  + LRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 408 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 229
           D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345

Query: 228 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 106
           T R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 30/74 (40%), Positives = 43/74 (58%)
 Frame = -2

Query: 772 ATKEAHIMESNLTGVPSRTKVKWAREHLENLSLSILCLPKMK*LTALVSPKGKGYKGVTS 593
           A K+AH+ME  + G     KV+WAREH E          + + +  +   +GKG +G T+
Sbjct: 172 AQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTA 231

Query: 592 RWHTKKLPRKTXQG 551
           RW TK+LPRKT +G
Sbjct: 232 RWGTKRLPRKTHRG 245



 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
 Frame = -1

Query: 797 HTQMKLLNSDKRGSHY-GIQLNXGTIEDQSEMGQRTSGEPIPVDSVFAQDEMIDCIGVTQ 621
           HTQ++     ++ +H   IQ+N G++ D+ E  +    + + + S F Q+EMID IGVT+
Sbjct: 163 HTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTR 222

Query: 620 GQ 615
           G+
Sbjct: 223 GK 224


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  206 bits (504), Expect = 2e-54
 Identities = 101/161 (62%), Positives = 120/161 (74%)
 Frame = -3

Query: 588 GTQRSYPVRHXKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 409
           GT+R  P +  + LRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 408 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 229
           D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345

Query: 228 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 106
           T R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 30/74 (40%), Positives = 43/74 (58%)
 Frame = -2

Query: 772 ATKEAHIMESNLTGVPSRTKVKWAREHLENLSLSILCLPKMK*LTALVSPKGKGYKGVTS 593
           A K+AH+ME  + G     KV+WAREH E          + + +  +   +GKG +G T+
Sbjct: 172 AQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTA 231

Query: 592 RWHTKKLPRKTXQG 551
           RW TK+LPRKT +G
Sbjct: 232 RWGTKRLPRKTHRG 245



 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
 Frame = -1

Query: 797 HTQMKLLNSDKRGSHY-GIQLNXGTIEDQSEMGQRTSGEPIPVDSVFAQDEMIDCIGVTQ 621
           HTQ++     ++ +H   IQ+N G++ D+ E  +    + + + S F Q+EMID IGVT+
Sbjct: 163 HTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTR 222

Query: 620 GQ 615
           G+
Sbjct: 223 GK 224


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 397 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 495
           NFA+L+  SL ++ +F++H +T    +   T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 364 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 486
           ++ L RC++   F +LF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 127 HGYTQEGSYSRRSCGYHNPS 68
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 349 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 477
           N FL  +  SRC V  N+ I + V S    ++F++     M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 712 VKWAREHLENLSLSILCLP 656
           + WA+E+++    S+LCLP
Sbjct: 340 ITWAKEYIKKAKDSLLCLP 358


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 409 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 534
           LF+D LS   D L+H   ++ +    T  S  H      SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,491,050
Number of Sequences: 5004
Number of extensions: 75232
Number of successful extensions: 202
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)