Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_C11
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC103567-7|AAL35730.2|  337|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>AC103567-7|AAL35730.2|  337|Caenorhabditis elegans Hypothetical
           protein Y51F10.3 protein.
          Length = 337

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 4/133 (3%)
 Frame = -3

Query: 620 FDVGSSYHCEAKFAKRW-IVHPSKGNVSWVWTVVRQVSFTLL-MACRCDSNTAQYERNRS 447
           F   S++ C+    K +      K  VS +W++V      L+ + C C +N    +R R 
Sbjct: 137 FPANSTWQCDCSETKFFGSTFCEKLIVSSLWSIVAGCILLLICVVCLCSANWFNRDRGRR 196

Query: 446 FGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPR--ESGGSKQCDFTS 273
             H  +       G    SAG+     +A  + A+ G     V PR   S  + +   + 
Sbjct: 197 RRHPTNRCMSTGDGTSGHSAGMRDTGRRAWPAQAQRG---TRVNPRGGPSSSTHRSSSSD 253

Query: 272 RVSHSKRETRRRS 234
            +  S+R   RR+
Sbjct: 254 ELISSERGAHRRT 266


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -3

Query: 446 FGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRV 267
           FG L H  G       LP   +    S+  + ++++G    +   R+SGGSK+   +   
Sbjct: 212 FGQLTHRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSGSPTRRQSGGSKERSPSQPD 271

Query: 266 SH--SKRETRRRSP 231
            H  +K + R RSP
Sbjct: 272 IHIVAKPQQRWRSP 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,254,737
Number of Sequences: 27780
Number of extensions: 391663
Number of successful extensions: 1134
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)