Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_C04
         (798 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0315 - 24331996-24332853                                         30   2.5  
04_01_0123 - 1283197-1283292,1283330-1284439,1284790-1285177,128...    29   3.2  
06_03_1345 + 29478768-29479922                                         29   4.3  
02_04_0288 + 21607289-21608251                                         29   4.3  
06_03_0555 + 22080522-22080845,22081190-22081290,22081916-22082027     29   5.7  
07_03_0506 - 18861787-18861917,18862017-18862201,18862542-188626...    28   7.5  
05_06_0032 - 25067996-25068156,25068746-25068815,25069385-250695...    28   7.5  
05_01_0012 - 70296-70398,70494-70648,70737-70843,71138-71216,713...    28   9.9  

>04_04_0315 - 24331996-24332853
          Length = 285

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 558 DGSGLEGHHPARLPAQRGRVQRALRPEPLRPYH 460
           DG G   HHP  + +Q G+  R   P PL P H
Sbjct: 21  DGGG--AHHPRLISSQVGQPARPTSPSPLPPRH 51


>04_01_0123 -
           1283197-1283292,1283330-1284439,1284790-1285177,
           1285523-1287609
          Length = 1226

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 39/136 (28%), Positives = 53/136 (38%), Gaps = 4/136 (2%)
 Frame = -2

Query: 518 QHNAAVYSAPYARNPFDHITDNEIDEYRRDVERKRRGNEYDTDLSES--EAISAAQMXXX 345
           QH  AV  A    NP+D + +   D+ +R  ER R   E  T+LS +  EA +AA     
Sbjct: 209 QHIRAV-QAILRENPYDPVLN---DDLKRWTERLR---ESVTNLSNAFEEAATAAHPEQP 261

Query: 344 XXXXXXXXXXSRDE--HRVLRIETKQAPVRSQPEVVLSDVDTTDFLNAERAHVDSTRGDH 171
                      R E   R          +R Q         T D +N  R HV S R D+
Sbjct: 262 PTGDANGEDPERRESPQRATPPPRGTGDLRDQINGRQEARRTRDNVNRSRRHVSSRRHDN 321

Query: 170 TVNGDHSDAHQSTFSH 123
              GD S+  +   +H
Sbjct: 322 GNRGDRSNEDRDQDNH 337


>06_03_1345 + 29478768-29479922
          Length = 384

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -2

Query: 539 GIIQRGYQHNAAVYSAPYARNPFDHITD--NEIDEYRRDVERKRR 411
           G+     +  AA  +   AR PFDH+     E+ E   D ER+RR
Sbjct: 38  GVAAASIRLRAARATGGDARQPFDHVPRGVEEVGEMEEDEERRRR 82


>02_04_0288 + 21607289-21608251
          Length = 320

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 465 MVEGVPGVGRAVHGRVVLVAALDDALRGRSHQH 563
           M  G P +GR    RV++ AA  D LR R+H +
Sbjct: 234 MAPGAPPLGRMACDRVMVCAAEGDFLRWRAHAY 266


>06_03_0555 + 22080522-22080845,22081190-22081290,22081916-22082027
          Length = 178

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 561 ADGSGLEGHHPARLPAQRGRVQR 493
           A GSG  G +PARL   R R+QR
Sbjct: 48  ARGSGYSGAYPARLRVARPRIQR 70


>07_03_0506 -
           18861787-18861917,18862017-18862201,18862542-18862613,
           18863163-18863234,18863596-18863667,18864371-18864518,
           18864864-18865922,18866663-18866762
          Length = 612

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 527 RGYQHNAAVYSAPYARNPFDHITDNEIDEYRRDVERKRRGNEYDT 393
           R  Q  AA   APYA++      D ++ ++ R  E  R GN+  T
Sbjct: 562 RRAQKLAAAREAPYAKSRTQFTRDMQMAKHHRPHESSRSGNDEST 606


>05_06_0032 -
           25067996-25068156,25068746-25068815,25069385-25069532,
           25069611-25069726,25069799-25069877,25069960-25070030,
           25070139-25070348,25070445-25070453,25070824-25070968,
           25071297-25071332,25071428-25071494,25071591-25071624
          Length = 381

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 510 VVLVAALDDALRGRSHQHHMVPRVGIHGXP 599
           ++L+  L     G S+QH M P + +HG P
Sbjct: 98  LILLFTLVLTCSGLSNQHTMTPEIAVHGFP 127


>05_01_0012 -
           70296-70398,70494-70648,70737-70843,71138-71216,
           71343-71423,71556-72581
          Length = 516

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 492 RAVHGRVVLVAALDDALRGRSHQHH 566
           R +H R  ++AAL + +  R+H HH
Sbjct: 252 RGLHARKRIMAALREEMAARNHHHH 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,667,998
Number of Sequences: 37544
Number of extensions: 378136
Number of successful extensions: 1490
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1489
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)