Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_C01
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...   114   1e-26
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...   109   4e-25
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    27   2.1  
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb...    26   4.8  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    25   8.4  

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  114 bits (274), Expect = 1e-26
 Identities = 53/69 (76%), Positives = 60/69 (86%)
 Frame = -3

Query: 575 PKXXGXAXNXSVXYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 396
           P   G A N SV YYEILNSPD+AC LAKQAFD+AI+ELD+L+E+SYKDSTLIMQLLRDN
Sbjct: 170 PIRLGLALNFSVFYYEILNSPDRACYLAKQAFDEAISELDSLSEESYKDSTLIMQLLRDN 229

Query: 395 LTLWTSDTQ 369
           LTLWTSD +
Sbjct: 230 LTLWTSDAE 238


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  109 bits (262), Expect = 4e-25
 Identities = 50/69 (72%), Positives = 58/69 (84%)
 Frame = -3

Query: 575 PKXXGXAXNXSVXYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 396
           P   G A N SV YYEIL+SP+ AC LAKQ FD+AI+ELD+L+E+SYKDSTLIMQLLRDN
Sbjct: 169 PMRLGLALNFSVFYYEILDSPESACHLAKQVFDEAISELDSLSEESYKDSTLIMQLLRDN 228

Query: 395 LTLWTSDTQ 369
           LTLWTSD +
Sbjct: 229 LTLWTSDAE 237


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 216 LASASVMIPRQTTFSNVTRFLI-NTDENKCVCWGECGEILVVAT 344
           L + SV+I   +TFS V+R L  +T   + VCW  C   L+ A+
Sbjct: 43  LVNGSVVIWDLSTFS-VSRVLTGHTRAIQSVCWSSCDRFLLTAS 85


>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 187 FAADLPVPSKIKCCVIFDGFVF-LYLHWIADI 95
           FA  LPVP   K C  F  F+  L  +W+ D+
Sbjct: 31  FAPALPVPINDKVCHFFVFFLLTLVFYWVFDL 62


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 125 YKTVKDDTTFNFRRNGKVRCERLLTFLQATARVGFGDDTAPD 250
           ++T   D   +F + G++R  RL+TF       GFG    PD
Sbjct: 237 FETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,748,679
Number of Sequences: 5004
Number of extensions: 30908
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)