Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_C01
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629...   122   4e-28
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065...   121   5e-28
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448...   121   7e-28
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760...   118   5e-27
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803...   117   1e-26
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553...   115   3e-26
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593...   109   3e-24
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007...    73   3e-13
02_02_0106 + 6814391-6817007,6817086-6817462                           29   3.8  

>03_05_0881 +
           28461857-28462263,28462357-28462435,28462798-28462920,
           28463632-28463748,28463861-28463917
          Length = 260

 Score =  122 bits (293), Expect = 4e-28
 Identities = 58/74 (78%), Positives = 61/74 (82%)
 Frame = -3

Query: 575 PKXXGXAXNXSVXYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 396
           P   G A N SV YYEILNSPD+AC LAKQAFDDAIAELDTL E+SYKDSTLIMQLLRDN
Sbjct: 174 PIRLGLALNFSVFYYEILNSPDRACNLAKQAFDDAIAELDTLGEESYKDSTLIMQLLRDN 233

Query: 395 LTLWTSDTQGDGDE 354
           LTLWTSD   DG +
Sbjct: 234 LTLWTSDNAEDGGD 247


>08_02_0753 -
           20805672-20805731,20805825-20805941,20806394-20806516,
           20806700-20806778,20806867-20807258
          Length = 256

 Score =  121 bits (292), Expect = 5e-28
 Identities = 60/78 (76%), Positives = 64/78 (82%), Gaps = 1/78 (1%)
 Frame = -3

Query: 575 PKXXGXAXNXSVXYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 396
           P   G A N SV YYEILNSPDKAC LAKQAFD+AI+ELDTL E+SYKDSTLIMQLLRDN
Sbjct: 169 PIRLGLALNFSVFYYEILNSPDKACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDN 228

Query: 395 LTLWTSD-TQGDGDEPAE 345
           LTLWTSD T+  GDE  E
Sbjct: 229 LTLWTSDLTEDGGDEVKE 246


>08_02_1026 +
           23743186-23743686,23743793-23743915,23744734-23744850,
           23744948-23745001
          Length = 264

 Score =  121 bits (291), Expect = 7e-28
 Identities = 57/74 (77%), Positives = 62/74 (83%)
 Frame = -3

Query: 575 PKXXGXAXNXSVXYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 396
           P   G A N SV YYEILNSPD+AC LAKQAFD+AI+ELDTL E+SYKDSTLIMQLLRDN
Sbjct: 179 PIRLGLALNFSVFYYEILNSPDRACTLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDN 238

Query: 395 LTLWTSDTQGDGDE 354
           LTLWTSD Q DG +
Sbjct: 239 LTLWTSDMQDDGGD 252


>11_06_0036 +
           19474848-19475188,19475696-19475774,19475880-19476002,
           19476970-19477086,19477169-19477228
          Length = 239

 Score =  118 bits (284), Expect = 5e-27
 Identities = 55/74 (74%), Positives = 61/74 (82%)
 Frame = -3

Query: 575 PKXXGXAXNXSVXYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 396
           P   G A N SV YYEILNSPD+AC LAKQAFD+AI+ELD+L E+SYKDSTLIMQLLRDN
Sbjct: 152 PIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDSLGEESYKDSTLIMQLLRDN 211

Query: 395 LTLWTSDTQGDGDE 354
           LTLWTSD   DG +
Sbjct: 212 LTLWTSDANDDGGD 225


>04_04_0141 +
           23079516-23079925,23080006-23080084,23080204-23080326,
           23081655-23081771,23081886-23081945
          Length = 262

 Score =  117 bits (281), Expect = 1e-26
 Identities = 56/74 (75%), Positives = 61/74 (82%)
 Frame = -3

Query: 575 PKXXGXAXNXSVXYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 396
           P   G A N SV YYEILNSPD+AC LAKQAFD+AI+ELDTL+E+SYKDSTLIMQLLRDN
Sbjct: 175 PIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDN 234

Query: 395 LTLWTSDTQGDGDE 354
           LTLWTSD   D  E
Sbjct: 235 LTLWTSDISEDTAE 248


>02_04_0360 +
           22353057-22353691,22354716-22355144,22355233-22355311,
           22355472-22355594,22356256-22356372,22356636-22356833
          Length = 526

 Score =  115 bits (277), Expect = 3e-26
 Identities = 54/67 (80%), Positives = 59/67 (88%)
 Frame = -3

Query: 575 PKXXGXAXNXSVXYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 396
           P   G A N SV YYEILNSPD+AC LAKQAFD+AI+ELDTL+E+SYKDSTLIMQLLRDN
Sbjct: 393 PIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDN 452

Query: 395 LTLWTSD 375
           LTLWTSD
Sbjct: 453 LTLWTSD 459


>01_01_0767 +
           5931031-5931281,5931414-5931594,5932020-5932129,
           5932212-5932360,5932686-5932738,5933168-5933260
          Length = 278

 Score =  109 bits (261), Expect = 3e-24
 Identities = 52/80 (65%), Positives = 60/80 (75%)
 Frame = -3

Query: 575 PKXXGXAXNXSVXYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 396
           P   G A N SV Y EI+NSPDKACQLAK AFD+A+AEL +L+E++YKDSTLIMQLLRDN
Sbjct: 159 PIRLGLALNISVFYCEIMNSPDKACQLAKNAFDEAVAELPSLSEENYKDSTLIMQLLRDN 218

Query: 395 LTLWTSDTQGDGDEPAEGGD 336
           L LW SD   D D+  E  D
Sbjct: 219 LALWNSDMADDADDIRERTD 238


>11_06_0360 -
           22699524-22699529,22699865-22699899,22700650-22700792,
           22701165-22701220,22701367-22701454,22702737-22703037,
           22704365-22704428
          Length = 230

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 31/55 (56%), Positives = 44/55 (80%)
 Frame = -3

Query: 530 EILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQG 366
           EI+NSP++A Q+AKQA D+A AE+++   + YKDS L+MQLL++NL LWTS+  G
Sbjct: 163 EIMNSPERASQVAKQALDEATAEINSAGVEGYKDSMLMMQLLKENLALWTSELTG 217


>02_02_0106 + 6814391-6817007,6817086-6817462
          Length = 997

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 285 CL*ENE*HSRTSSGAVSSPKPTRAVACKNVKSRSQRTFPFRLKL-NVVSSLTVL 127
           CL +N  H   S   +SSP PT    C N+K        F  KL N ++SL  L
Sbjct: 93  CLLKNLTHLDVSYNNISSPFPTMLYNCSNLKYLDLSNNAFAGKLPNDINSLPAL 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,487,617
Number of Sequences: 37544
Number of extensions: 206685
Number of successful extensions: 612
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)