Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_B24
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.46 
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    28   1.9  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    28   1.9  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    28   1.9  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    26   7.5  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   10.0 

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +2

Query: 197  PSHGTPDRWPPATRPPVPSXQRAESPL*WRRVTPSPRAVGGTRSAITRLPIAGERASTP- 373
            PS G P   PP+T PPVP+      P+      P+ +A      +     ++  R+S P 
Sbjct: 1203 PSVGVPPVPPPSTAPPVPTPSAGLPPV----PVPTAKAPPVPAPSSEAPSVSTPRSSVPS 1258

Query: 374  PHVWVSP 394
            PH   SP
Sbjct: 1259 PHSNASP 1265



 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 173  TEHITSIPPSHGTPDRWPPATRPPVPSXQRAESPL 277
            +  I SIP   G P    P+  PPVP    A  P+
Sbjct: 1070 SSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPV 1104


>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 137 QSGLLKRRDRVDTEHITSIPPSHGTPDRWPPATRP 241
           +  +LK+ D    +H+ S P     PD++ P T P
Sbjct: 3   EESILKKCDSSSIKHVPSTPLETNCPDKYNPKTWP 37


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 137 QSGLLKRRDRVDTEHITSIPPSHGTPDRWPPATRP 241
           +  +LK+ D    +H+ S P     PD++ P T P
Sbjct: 3   EESILKKCDSSSIKHVPSTPLETNCPDKYNPKTWP 37


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 137 QSGLLKRRDRVDTEHITSIPPSHGTPDRWPPATRP 241
           +  +LK+ D    +H+ S P     PD++ P T P
Sbjct: 3   EESILKKCDSSSIKHVPSTPLETNCPDKYNPKTWP 37


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 366 LARSPAIGSRVMADRVPPTALGEGVTRRHQSGLS 265
           LA  P++     AD+  P+   E +TR++  G+S
Sbjct: 209 LASRPSLPDLTSADKSQPSDEAESITRKNSIGMS 242


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 20/86 (23%), Positives = 38/86 (44%)
 Frame = +2

Query: 77   TSLKTPAAHNRRPTSDRAGAQSGLLKRRDRVDTEHITSIPPSHGTPDRWPPATRPPVPSX 256
            +SLK     + + ++   G ++  +K++   D +    IP S  TP        PP    
Sbjct: 1373 SSLKPSTITSTKASAKNKGKKASSVKKQSPEDDDDDFIIPGSSSTPKASSTNAEPP---- 1428

Query: 257  QRAESPL*WRRVTPSPRAVGGTRSAI 334
            + ++SP+   R  P+ RA    ++ I
Sbjct: 1429 EDSDSPI---RKRPTRRAAATVKTPI 1451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,259,967
Number of Sequences: 5004
Number of extensions: 65821
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)