Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_B22
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39999-13|AAA81111.1|  320|Caenorhabditis elegans Hypothetical p...    29   2.8  
AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical ...    29   4.9  
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    29   4.9  

>U39999-13|AAA81111.1|  320|Caenorhabditis elegans Hypothetical
           protein F41G3.2 protein.
          Length = 320

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 22/70 (31%), Positives = 32/70 (45%)
 Frame = +1

Query: 214 GGFPRSTLQPDTRRHPEDARPTGRRGDSRRPTTSVSAVRRPYQAARAVPLVFRDTPLGQN 393
           G  PR+  +P + + P+      + G  R+P T    VR         PL+ R TP+G+N
Sbjct: 160 GSMPRAQRKPGSYQ-PQMHDHRSQDGGYRQPQTETFFVRHQ-------PLLRRRTPVGRN 211

Query: 394 QPAGSERDTP 423
           Q   S R  P
Sbjct: 212 QLRHSRRSRP 221


>AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical
           protein F54A3.1 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 268 ARPTGRRGDSRRPTTSVSAV-RRPYQAARAVPLVFRDTPLGQNQPAGSERDTPPT 429
           A P   R     PTTS S++ RRP  A+ +VP V    P G      S R  PP+
Sbjct: 364 AAPGAPRSRIAMPTTSSSSLARRPGSASSSVPRV----PTGAASMTSSSRIRPPS 414


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 21/62 (33%), Positives = 27/62 (43%)
 Frame = +3

Query: 489 RSPQPPTRRPVLLVPAR*SDGSVRRSLNPLRLPRDHHRXGDCLLIGAGAGQRPSPTPARR 668
           RSP PP RR +   P R S    RR ++  R P    +            +  SP PA+R
Sbjct: 113 RSPSPPRRRRISRSPVRRSRSPPRRQVSRSRSPPPRRQQ-----------RSRSPPPAKR 161

Query: 669 RR 674
           RR
Sbjct: 162 RR 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,365,869
Number of Sequences: 27780
Number of extensions: 315448
Number of successful extensions: 818
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)