Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_B20
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    28   1.7  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    28   1.7  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    26   7.0  

>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +1

Query: 619 TDPSHPHAPDSKHTVYSFXXSRNSI 693
           T  S P AP  KH +Y F  SR  I
Sbjct: 29  TPDSSPAAPSKKHKLYDFLESRGKI 53


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 401 SVSSRLGEAGSAPRVSRVQAAARHPRRSGASSPTSLILVTSLHY 270
           S SSR G   S+     + + ++    SG+S+ TS + VTS  Y
Sbjct: 546 SSSSRSGSTSSSGSSHTITSTSQSVHTSGSSTSTSSVAVTSTAY 589


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 580 FHLATGPGSAPHWTDPSHPHAPDSKHTVYSFXXSRN 687
           F  A G  S PH +  S+  AP+ K  +Y     +N
Sbjct: 299 FRQAKGSASHPHGSGSSNGVAPNGKRALYKTEPCKN 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,128,657
Number of Sequences: 5004
Number of extensions: 30717
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)