Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_B19
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   0.54 
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    29   0.64 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.64 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.84 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.5  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   7.9  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect(2) = 0.54
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 587 LPXPPPPPGTXXPP 628
           LP PPPPP    PP
Sbjct: 235 LPAPPPPPPPTLPP 248



 Score = 22.2 bits (45), Expect(2) = 0.54
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +2

Query: 551 AAXPRXKXXXXXLPXPPPPP 610
           AA P         P PPPPP
Sbjct: 176 AAAPATSLPSDYNPPPPPPP 195


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -2

Query: 338 RAPPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 240
           R+PPP     +RS+   L    D+TP+ +W  ++S W
Sbjct: 99  RSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 14/46 (30%), Positives = 17/46 (36%)
 Frame = +2

Query: 590 PXPPPPPGTXXPPXPXXPXSXPGXXXXPATKXXPNRFPTAXXAXPS 727
           P  PPP     PP P      P     PA    P + P +  + PS
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPS 192


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 590 PXPPPPPGTXXPPXPXXPXSXPG 658
           P PPPPP    PP    P   PG
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPG 31


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +2

Query: 587 LPXPPPPPGTXXPPXPXXPXSXPGXXXXPATKXXP 691
           +P PPP P    PP P  P    G    P     P
Sbjct: 749 IPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +3

Query: 573  PXXXTXPXXPHXPXHXPRPPPXXPXPXPGXPXFPP 677
            P   + P  P  P   P PP   P P  G P  PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMP-AGPPSAPP 1732



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
 Frame = +2

Query: 590  PXPPPPPGTXXPPX--PXXPXSXPGXXXXP 673
            P PPPPP +  PP   P  P   P     P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/53 (30%), Positives = 18/53 (33%)
 Frame = +3

Query: 507  RXQTAXLXGXGLXXXPPXHGSXPXXXTXPXXPHXPXHXPRPPPXXPXPXPGXP 665
            R Q+A          PP   S P   + P  P  P   P PPP      P  P
Sbjct: 1693 RPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP-PPPLPASSAPSVP 1744


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/48 (31%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
 Frame = +3

Query: 567 SXPXXXTXPXXPHX--PXHXPRPPPXXPXPXPGXPXFPPQNXLXIXFP 704
           S P   T P  P    P   P  PP  P   P  P  PP   +    P
Sbjct: 413 STPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 329 PPPLRSLISNLSNTCDLTPLPEW 261
           P P+ S    ++N  +L PLPEW
Sbjct: 10  PKPMDSSHIKVTNVKELKPLPEW 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,718,029
Number of Sequences: 5004
Number of extensions: 20608
Number of successful extensions: 149
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)