Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_B19
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   1.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.3  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 314 SLISNLSNTCDLTPLPEWSCEQSAWWGACGRVL 216
           SL +N   +  LTP P W+  ++   GACG  +
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKA---GACGSAI 127


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/29 (37%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
 Frame = +3

Query: 591  PXXPHXPXHXPRPPPXXPXP-XPGXPXFP 674
            P  P  P +   PPP  P P   G P  P
Sbjct: 1154 PHLPFTPFNFWNPPPFMPSPFMAGAPNVP 1182


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
 Frame = -2

Query: 353  VQHC---RRAPPPPLRSLISNLSN 291
            + HC   RR PPPP       LS+
Sbjct: 1692 LNHCAPNRRCPPPPRMGSAEGLSH 1715


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 11/41 (26%), Positives = 13/41 (31%)
 Frame = +3

Query: 555 PXHGSXPXXXTXPXXPHXPXHXPRPPPXXPXPXPGXPXFPP 677
           P  G+     +    P  P     P P    P  G P  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,898
Number of Sequences: 438
Number of extensions: 2855
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)