Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_B13
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   3.8  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    27   3.8  
SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr ...    27   3.8  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    26   5.0  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 354 APQQHAELQRVHQVLHQEQSAQ 419
           APQQH +LQR+  +L   Q  Q
Sbjct: 129 APQQHPQLQRMMPILSSNQPIQ 150



 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = +3

Query: 240 LASTCALFISLGLRQREQRYPTEDDERDPVEARPHVREAPQQHAELQRVHQVLH 401
           L +  + +I + L+Q++Q  P +  ++   + +P   + PQQ  + Q+  + LH
Sbjct: 154 LPNQASPYIPVPLQQQQQSQPQQQPQQQQHQ-QPQQPQPPQQPLQQQQQQRQLH 206


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -3

Query: 408 VPGGGPGGLAEVRRAA 361
           V GGG GGLA  RRAA
Sbjct: 12  VIGGGSGGLASARRAA 27


>SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 284

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 330 EARPHVREAPQQHAELQRVHQVLHQEQSAQLIQ 428
           EAR  +RE  ++HA+++R+ + +   + AQL Q
Sbjct: 176 EARTALREVQERHADIKRIERTI--AELAQLFQ 206


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +2

Query: 506 QQPFEGMSIVGLLNGLQHVLVXAEGDGRAERQQ 604
           Q P   +SI+G+++G+ H +    G+ ++  Q+
Sbjct: 126 QNPISQLSIIGVMDGIAHRITDLHGNPQSHIQK 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,587,989
Number of Sequences: 5004
Number of extensions: 18712
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)