Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_B13
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0181 + 17618888-17619125,17621503-17621683,17621765-176219... 35 0.080
01_01_0885 + 6966700-6966979,6967930-6968110,6968224-6968365,696... 34 0.14
05_06_0144 - 25973635-25973801,25973878-25973947,25974049-259741... 33 0.25
02_02_0367 + 9496893-9497022,9498262-9498442,9498519-9498660,949... 31 0.75
03_02_0927 - 12452262-12452428,12452538-12452607,12452689-124528... 31 0.99
01_06_0631 + 30732091-30732292,30732690-30732870,30732994-307331... 29 3.0
03_01_0347 - 2730242-2730425,2730541-2730692,2730782-2730940,273... 29 4.0
04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018... 28 7.0
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 28 7.0
03_06_0184 - 32188778-32188947,32189104-32189173,32189332-321894... 28 9.2
>06_03_0181 +
17618888-17619125,17621503-17621683,17621765-17621906,
17622002-17622071,17622162-17622307,17623382-17623948,
17624558-17624641,17624723-17624797,17625049-17625217,
17625395-17625586,17625662-17626053
Length = 751
Score = 34.7 bits (76), Expect = 0.080
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = -1
Query: 428 LYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLP 279
L+ R + L DL L V LW L+ VG+C + +TLI + + L T+P
Sbjct: 170 LHLFREIALGHDLKKFLGVIVALWVLSEVGSCCDFLTLIYVAVLMLHTVP 219
>01_01_0885 +
6966700-6966979,6967930-6968110,6968224-6968365,
6968448-6968517,6968617-6968783
Length = 279
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = -1
Query: 419 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLP 279
LR++ L D+ L LW L+ +G+C N +TL+ + ++ L T+P
Sbjct: 187 LRQIALGRDIKKFLIVIAGLWLLSVLGSCCNFLTLVYIVFVVLHTVP 233
>05_06_0144 -
25973635-25973801,25973878-25973947,25974049-25974190,
25974647-25974827,25975248-25975443
Length = 251
Score = 33.1 bits (72), Expect = 0.25
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -1
Query: 419 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLP 279
LR + DL L V LW L+ +G+C N +TL + ++ L+T+P
Sbjct: 159 LREIGQGHDLKKFLIVVVGLWVLSVLGSCCNFLTLFYIVFMVLYTVP 205
>02_02_0367 +
9496893-9497022,9498262-9498442,9498519-9498660,
9498757-9498826,9498920-9499089
Length = 230
Score = 31.5 bits (68), Expect = 0.75
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = -1
Query: 428 LYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLP 279
L+ LR + L DL+ L V LW L+ +G+ + +TL + + L T+P
Sbjct: 134 LHLLREISLGHDLMKFLGVIVALWILSEIGSLCDFLTLFYVAVLMLHTVP 183
>03_02_0927 -
12452262-12452428,12452538-12452607,12452689-12452830,
12452937-12453117,12454068-12454203
Length = 231
Score = 31.1 bits (67), Expect = 0.99
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -1
Query: 368 VLLWCLTYVGACFNGITLIILGWIALFTLP 279
+LLW L+ +G + ITL G IAL T+P
Sbjct: 156 LLLWLLSVIGNFCSSITLAYFGTIALVTIP 185
>01_06_0631 +
30732091-30732292,30732690-30732870,30732994-30733135,
30733228-30733297,30733383-30733549
Length = 253
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -1
Query: 362 LWCLTYVGACFNGITLIILGWIALFTLP 279
LW L+ +G+ N +TL + ++AL+T+P
Sbjct: 180 LWILSVLGSSCNFLTLFYIVFVALYTVP 207
>03_01_0347 -
2730242-2730425,2730541-2730692,2730782-2730940,
2734144-2734618,2734713-2734775,2734870-2735078
Length = 413
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 374 FGVLLWCLTYVGACFNGITLIILGW 300
FG+ WC+ Y G NG T+ W
Sbjct: 292 FGLKFWCIVYSGFACNGFTVFAQLW 316
>04_04_1534 +
34200538-34200589,34200677-34200857,34201701-34201842,
34201963-34202032,34202169-34202302
Length = 192
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -1
Query: 380 LKFGVLLWCLTYVGACFNGITLIIL 306
+K ++LW ++Y+G FN +TLI +
Sbjct: 124 IKVILILWVVSYIGMLFNFLTLIYI 148
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -3
Query: 402 GGGPGGLAEVRRAAVVPHVRGGVLQRDHAHHPRLDS 295
GG GG A+ R + HV G V Q HHP+L S
Sbjct: 292 GGSAGGGADGSRYWLAIHVVGVVRQTFTNHHPKLCS 327
>03_06_0184 -
32188778-32188947,32189104-32189173,32189332-32189473,
32189559-32189739,32189857-32190051,32190782-32190795,
32190815-32190864,32191493-32191519
Length = 282
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 362 LWCLTYVGACFNGITLIILGWIALFTLP 279
LW +G N +T+I +G+++ TLP
Sbjct: 208 LWAAAVIGGWCNFLTVIYIGFVSAHTLP 235
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,477,090
Number of Sequences: 37544
Number of extensions: 150894
Number of successful extensions: 642
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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