Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_B11
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    29   1.0  
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar...    27   2.4  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    26   7.3  
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    25   9.7  
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M...    25   9.7  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   9.7  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   9.7  

>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 554 RHERXGRLILQGHDDFRCVNFSSPRKLA 637
           RH + G L ++ H DF   NF++P +LA
Sbjct: 314 RHHQPGNLYIRFHVDFPEPNFATPEQLA 341


>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 341

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 254 RTVEAICPVLADWVGRDRGSLTSGLPVQDSQDILPPCKLLT 376
           + V A+ PV       D+    SG P+ D QD + PCK  T
Sbjct: 83  KKVTAVLPVFPYSRQPDQKFSFSGAPLSDLQDAVVPCKKQT 123


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 455 EEAXREHLSSTHKHALXRKXLHPASEPEHRRIARHERXGRLILQGHDD 598
           EE   E L+S H   L      P ++P HRR++++   G  + Q  D+
Sbjct: 44  EEVAAEKLNSEH---LLENEFAPITDPTHRRVSKNP-DGAELFQFEDE 87


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 345 KTFYHHANFLPQQIL 389
           +TF HHAN  P++IL
Sbjct: 13  RTFAHHANLTPRKIL 27


>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 317 TSGLPVQDSQDILPPCKLLTATNLTSHHANYNFTGSTS 430
           T GLP+  S DIL   K L    L+  H ++    ST+
Sbjct: 269 TFGLPIDQSMDILRNFKKLLQFILSGQHLSFVQVTSTA 306


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = +2

Query: 368 LLTATNLTSHHANYNFTGSTSLTRRXSHTEEAXREHLSST--HKHALXRKXLHPASEPEH 541
           +L+ +    HHA  +F  +   +   S    A  +HL S+  +   +  +   PA EP  
Sbjct: 1   MLSNSTFHEHHAKSHFHNNACQSNASSSACRASEDHLVSSFPNDSIIDLQPSRPAPEPPK 60

Query: 542 RRIARHER 565
           ++   + R
Sbjct: 61  KKFGYYAR 68


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/71 (19%), Positives = 26/71 (36%)
 Frame = +3

Query: 390  PATTQTTILRVPPLLHDVTPTLRKPXANTCQARTSTHFXGKXCIRHRNPNTAASPDTNAX 569
            P T+ T +   PP+          P  ++    TST       +    P T+++    + 
Sbjct: 1643 PITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTST 1702

Query: 570  DVLSYRVTTTS 602
             + S  V  +S
Sbjct: 1703 PITSSSVLNSS 1713


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,718
Number of Sequences: 5004
Number of extensions: 45309
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)