Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_B11
         (813 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006720-9|AAF60443.2|  480|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z69792-1|CAB61002.1|  605|Caenorhabditis elegans Hypothetical pr...    29   4.0  
D85744-1|BAA12861.1|  605|Caenorhabditis elegans HCH-1 protein.        29   4.0  

>AC006720-9|AAF60443.2|  480|Caenorhabditis elegans Hypothetical
           protein Y17G9B.1 protein.
          Length = 480

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 136 VLWQVQPETSTCVPELQCVTDKWXWLPLYVPFKV 35
           +LWQ+    +TC P LQ   ++W  L L + FK+
Sbjct: 421 ILWQL---ITTCKPRLQVDKERWIQLLLNIKFKI 451


>Z69792-1|CAB61002.1|  605|Caenorhabditis elegans Hypothetical
           protein F40E10.1 protein.
          Length = 605

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +3

Query: 390 PATTQTTILRVPPLLHDVTPTLRKPXANTCQARTST 497
           P TT TT    P  +  V+PT       T  ARTST
Sbjct: 478 PTTTSTTTTTAPITVPTVSPTTTTTRQTTTTARTST 513


>D85744-1|BAA12861.1|  605|Caenorhabditis elegans HCH-1 protein.
          Length = 605

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +3

Query: 390 PATTQTTILRVPPLLHDVTPTLRKPXANTCQARTST 497
           P TT TT    P  +  V+PT       T  ARTST
Sbjct: 478 PTTTSTTTTTAPITVPTVSPTTTTTRQTTTTARTST 513


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,429,467
Number of Sequences: 27780
Number of extensions: 284963
Number of successful extensions: 796
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)