Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_B08
(780 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.34
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171... 31 1.0
07_03_0846 - 21983581-21986055 30 2.4
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 30 2.4
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.1
03_05_0183 - 21681673-21682524 29 4.1
01_06_0738 - 31598545-31598751,31598848-31598934,31598991-315990... 28 7.2
01_06_0695 - 31292622-31293317 28 7.2
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 28 9.6
07_03_1086 + 23858419-23859423,23859527-23859610 28 9.6
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202 28 9.6
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 9.6
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.34
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 91 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 219
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>01_07_0124 +
41212728-41212922,41215156-41215210,41215336-41217128,
41217363-41217521,41217883-41218054,41218173-41218471,
41219060-41219368
Length = 993
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +1
Query: 199 KKTDSIDLRDPNGLRRRVSRFKCETRLVKSHCSEPPDSRGSTVSISLPDSARLASALEAF 378
KKT ++ + P+ R + K + +V S CS D G+ ++ + R+ASA++AF
Sbjct: 566 KKTMAVVIASPSAGGRPRAFLKGASEVVLSRCSLVLDGTGNVEKLTDAKAKRVASAIDAF 625
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +1
Query: 217 DLRDPNGLRRRVSRFKCETRLVKSHCSEPPDSRGSTVSISLPDSARLASA 366
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 29.9 bits (64), Expect = 2.4
Identities = 23/85 (27%), Positives = 30/85 (35%)
Frame = +1
Query: 64 NRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLR 243
+RS+ A R +S D P HR P R R K D R P+
Sbjct: 501 SRSRSPAEHQRRDVRNRLRSGRDGGGPDHRNSSPPVNRGRSRSRSKSRDPSKSRSPDAPA 560
Query: 244 RRVSRFKCETRLVKSHCSEPPDSRG 318
++ S R S S P S+G
Sbjct: 561 KKGSSKYNRRRSSSSRSSSPAGSKG 585
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 446 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 348
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 658 SQAFIATLLFDPSMSALPIIAKQNSPS 578
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>01_06_0738 -
31598545-31598751,31598848-31598934,31598991-31599049,
31599139-31599277,31599278-31599337,31600504-31600632
Length = 226
Score = 28.3 bits (60), Expect = 7.2
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Frame = +1
Query: 121 SSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFKCETRLVKSHCSE 300
S T Y+ T + +++ R AR + + + I ++ ++R+ E +++K SE
Sbjct: 122 SLTSYAREVAGTAIIYEVQ-RSARAEARKEEIRKQEIEARKQRIEELASEVQMMKKRISE 180
Query: 301 P----------PDSRGSTVSISLPDSARLASALEAFRH 384
P+SRGST + + ++ A+A +H
Sbjct: 181 IERQQDERRALPNSRGSTTATPMQAASAAAAAAAKAKH 218
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +1
Query: 43 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 177
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +1
Query: 37 ESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSI 216
+SPG L R HD +L KSST + R E SR +KT+S+
Sbjct: 734 DSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKTESV 790
Query: 217 D 219
+
Sbjct: 791 E 791
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 27.9 bits (59), Expect = 9.6
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Frame = -2
Query: 506 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 342
LL CD N A + LVHAL AA A +A L A AS+ +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188
Query: 341 GKDMLTVEPRESGGS 297
G L V E+GG+
Sbjct: 189 GAIPLLVSLLETGGA 203
>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
Length = 711
Score = 27.9 bits (59), Expect = 9.6
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +1
Query: 145 RHRTELY-PDLRSRDARVKKKTDSIDLR-DPNG-LRRRVSRFKCETRLVKSHCSEPPDSR 315
R R E+ DLR R R + S+ + + NG RRR R++ +SH SR
Sbjct: 383 RDRVEMDGSDLRHRLRRRRINESSLAISPERNGEQRRRDERYRERAHGHRSHRDHHQSSR 442
Query: 316 GSTVSISLPDSARL 357
GST+S L +L
Sbjct: 443 GSTLSSRLQGRIKL 456
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 27.9 bits (59), Expect = 9.6
Identities = 34/111 (30%), Positives = 46/111 (41%), Gaps = 11/111 (9%)
Frame = +1
Query: 94 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDS-IDLRDPNGLRR-------- 246
S +PR+ R YS R R+ RD+R ++++ S D R P G R
Sbjct: 143 SPSPRRGRSRGRSYSRSRSRSYSRSQSPRRDSRNERRSRSPRDSRSPRGSPRDSRSPRGS 202
Query: 247 -RVSRF-KCETRLVKSHCSEPPDSRGSTVSISLPDSARLASALEAFRHNPA 393
R SR K R +S P DSR S S P+ + A R +PA
Sbjct: 203 PRDSRSPKGSPRDTQSPRGSPRDSRSPRRSASPPNGRNRSPTPNASR-SPA 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,051,380
Number of Sequences: 37544
Number of extensions: 488731
Number of successful extensions: 1342
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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