Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_B07
         (810 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0153 - 14910420-14910769,14910946-14911008,14911084-149113...    31   1.4  
03_02_0992 + 13049871-13050449                                         30   1.9  
07_03_1136 + 24218601-24218734,24218769-24219906                       29   3.3  
01_06_0581 - 30386018-30386440                                         29   4.4  
07_03_0615 + 19983003-19983238,19983297-19983558,19983651-199839...    29   5.8  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    29   5.8  
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56...    28   7.6  

>03_03_0153 -
           14910420-14910769,14910946-14911008,14911084-14911339,
           14911432-14911522,14911798-14912096,14912177-14912295,
           14922536-14922594,14922676-14922965,14923052-14923567,
           14923634-14923936
          Length = 781

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/55 (32%), Positives = 21/55 (38%)
 Frame = +2

Query: 473 PSYRHER*TPPPSGGLHAXAATPXPXXAXXLXPPPAXXGARXGPLXXAPXRXSPG 637
           P+    R TPPP GG  A  +TP       + PP A      G    A    S G
Sbjct: 631 PAAHVPRPTPPPHGGFRAPFSTPPSSARPSVVPPTAQFWQYTGTSSQAAGTSSQG 685


>03_02_0992 + 13049871-13050449
          Length = 192

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 470 LPSYRHER*TPPPSGGLHAXAATPXPXXAXXLXP-PPAXXGARXG 601
           LP +RH R  PPPS G    A+T  P  A  + P  PA  G+R G
Sbjct: 78  LPPHRHRRSVPPPSLG-RGVASTSPPLHAATVTPLRPA--GSRSG 119


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/55 (34%), Positives = 19/55 (34%)
 Frame = -1

Query: 663 GXXXARXXXPGDXRXGAXXSGPXRAPXXAGGGXRXXAXXGXGVXXXXXRPPLGGG 499
           G   AR   PG    G     P R     GGG       G G      RPP GGG
Sbjct: 126 GGGGARPPAPGG---GGGGGAPRRVLGGGGGGGALARPPGGGRGGALGRPPGGGG 177


>01_06_0581 - 30386018-30386440
          Length = 140

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 270 SGVRSQVLERLEMRLRSGGGGARRQ 344
           SG+  +V +R+E   R GGGG RR+
Sbjct: 31  SGIEVKVRKRVEKEARMGGGGRRRR 55


>07_03_0615 +
           19983003-19983238,19983297-19983558,19983651-19983906,
           19983982-19984044,19984131-19984570
          Length = 418

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 473 PSYRHER*TPPPSGGLHAXAATPXPXXAXXLXPP 574
           P+    R TPPP GG  A  +TP       + PP
Sbjct: 238 PAAHVPRPTPPPHGGFRAPFSTPPSSARPSVVPP 271


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
 Frame = +2

Query: 500  PPPSGGL---HAXAATPXPXXAXXLXPPPAXXGARXGPLXXAP 619
            PPP GGL    A  A P P     + PPP   G    P    P
Sbjct: 1124 PPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPP 1166



 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +2

Query: 500  PPPSGGLHAXAATPXPXXAXXLXPPPAXXGARXGP 604
            PPP GGL    A P P       PPP   G    P
Sbjct: 1151 PPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPP 1185


>08_01_0080 +
           566509-566746,566904-567151,567347-567532,567639-567734,
           567836-567907,567990-568106,570531-571676
          Length = 700

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +2

Query: 467 NLPSYRHER*TPPPSGGLHAXAATPXPXXAXXLXPPPAXXGAR 595
           N P+Y      PP   G  A  A P P  A  + P PA  G +
Sbjct: 656 NPPAYDQSA-QPPAQSGYAAPPANPQPAVAKGVSPQPAGYGGQ 697


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,408,556
Number of Sequences: 37544
Number of extensions: 253675
Number of successful extensions: 946
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)