Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_B07
         (810 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    32   0.42 
Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical pr...    29   5.2  

>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 17/55 (30%), Positives = 20/55 (36%)
 Frame = -3

Query: 718 KXGGRGXXGRXGXLXSXGWXQXGQXGGSXRXAXRXXXEWSGPSAGXXXWGXEXAG 554
           + GG G     G     GW   G  GG  R   R   +W G + G   WG    G
Sbjct: 31  RWGGWGGNRWGGGGGPGGWGNNG-GGGWGRGGGRGGGDWGGNNGGGGNWGGNGGG 84



 Score = 31.5 bits (68), Expect = 0.74
 Identities = 16/56 (28%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
 Frame = -3

Query: 718 KXGGRGXXGRXGXLXSXGWXQXGQXGGSXRXAXRXXX-EWSGPSAGXXXWGXEXAG 554
           + GG G  G  G     GW + G  GG            W G   G   WG    G
Sbjct: 39  RWGGGGGPGGWGNNGGGGWGRGGGRGGGDWGGNNGGGGNWGGNGGGRGDWGGNGGG 94


>Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical
           protein T28C6.1 protein.
          Length = 281

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/48 (33%), Positives = 18/48 (37%)
 Frame = -3

Query: 712 GGRGXXGRXGXLXSXGWXQXGQXGGSXRXAXRXXXEWSGPSAGXXXWG 569
           GG+   GR G     GW   G+ GG           W  PS G   WG
Sbjct: 233 GGQQGGGRGGQQGPGGWGGGGRGGGWGGWGRGSRWGWGRPSWG--GWG 278



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
 Frame = -3

Query: 745 WXXXXEAXAKXGGRGXXGRXGX-LXSXGWX--QXGQXGGSXRXAXRXXXEWSGPSAG--X 581
           W     + +  G  G  G+ G    + GW   Q GQ GG  R        W G   G   
Sbjct: 120 WGGSSRSDSGSGQGGWGGQQGGNSNAGGWGGSQGGQNGGGGRGGSGGQGGWGGSQDGGSQ 179

Query: 580 XXWGXEXAG 554
             WG +  G
Sbjct: 180 GGWGGQNGG 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,974,666
Number of Sequences: 27780
Number of extensions: 148217
Number of successful extensions: 347
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)