Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_B02
(773 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 241 6e-65
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 124 2e-29
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 103 3e-23
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 99 6e-22
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 91 2e-19
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 71 2e-13
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 66 5e-12
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 66 7e-12
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.9
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 6.9
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 9.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 241 bits (591), Expect = 6e-65
Identities = 111/133 (83%), Positives = 117/133 (87%)
Frame = -3
Query: 717 PXGQVIXIGNEXFRCPEVXFQPSXLGMEACGIHXTTYNSIMKCDVXIRKDLYANTVLSGG 538
P GQVI IGNE FR PE FQPS LG+E GIH TYNSIMKCDV IRKDLY N V+SGG
Sbjct: 243 PDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGG 302
Query: 537 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 358
TTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEY
Sbjct: 303 TTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEY 362
Query: 357 DESGPSIVHRKCF 319
DESGP IV+RKCF
Sbjct: 363 DESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 124 bits (298), Expect = 2e-29
Identities = 56/133 (42%), Positives = 86/133 (64%)
Frame = -3
Query: 717 PXGQVIXIGNEXFRCPEVXFQPSXLGMEACGIHXTTYNSIMKCDVXIRKDLYANTVLSGG 538
P Q I +G E F PEV F P +G EA G+H + SI+ D+ +R LY+N VLSGG
Sbjct: 248 PDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGG 307
Query: 537 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 358
+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY
Sbjct: 308 STLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY 367
Query: 357 DESGPSIVHRKCF 319
++ +++ R+ F
Sbjct: 368 -KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 103 bits (247), Expect = 3e-23
Identities = 55/136 (40%), Positives = 83/136 (61%), Gaps = 12/136 (8%)
Frame = -3
Query: 717 PXGQVIXIGNEXFRCPEVXFQPSXLGMEACGIHXTTYNSIMKCDVXIRKDLYANTVLSGG 538
P G+VI +G+E + CPE FQP +G E G+ +++I DV IRK LY VLSGG
Sbjct: 243 PDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGG 302
Query: 537 TTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSILAS-LS 394
++MY G+ R++KEI L P+ + K+KI P R+++V+IGG++LA ++
Sbjct: 303 SSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMA 362
Query: 393 TFQQMWISKQEYDESG 346
MW+SK E++E G
Sbjct: 363 QNDHMWVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 99.1 bits (236), Expect = 6e-22
Identities = 53/135 (39%), Positives = 72/135 (53%), Gaps = 11/135 (8%)
Frame = -3
Query: 717 PXGQVIXIGNEXFRCPEVXFQPSXLGMEAC---------GIHXTTYNSIMKCDVXIRKDL 565
P G G E FR E+ F PS + G+H Y SI+ CD +R L
Sbjct: 284 PDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPL 343
Query: 564 YANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII-APPERKYSVWIGGSILASLST 391
N V++GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL
Sbjct: 344 LNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDN 403
Query: 390 FQQMWISKQEYDESG 346
FQ +W+SKQEYDE G
Sbjct: 404 FQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 91.1 bits (216), Expect = 2e-19
Identities = 46/108 (42%), Positives = 69/108 (63%), Gaps = 6/108 (5%)
Frame = -3
Query: 627 GIHXTTYNSIMKCDVXIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 448
GI N I +CDV IR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 447 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 322
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 70.5 bits (165), Expect = 2e-13
Identities = 39/128 (30%), Positives = 61/128 (47%)
Frame = -3
Query: 708 QVIXIGNEXFRCPEVXFQPSXLGMEACGIHXTTYNSIMKCDVXIRKDLYANTVLSGGTTM 529
QV+ + NE F PE+ F PS + + GI S+ I+ L N V GG
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCK 331
Query: 528 YPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDES 349
+PG R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E
Sbjct: 332 FPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEH 390
Query: 348 GPSIVHRK 325
G +I+ RK
Sbjct: 391 GANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 66.1 bits (154), Expect = 5e-12
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 15/140 (10%)
Frame = -3
Query: 702 IXIGNEXFRCPEVXFQPSXLGME-ACGIHXTTYNSIMKCDVXIRKDLYANTVLSGGTTMY 526
I +G E F PE+ F P + + N + + +RK LY N VLSGG+T++
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339
Query: 525 PGIADRMQKEITALAPST--------------MKIKIIAPPERKYSVWIGGSILASLSTF 388
+R+Q+++ + + + +I+ ++ +VW GGS+LA F
Sbjct: 340 KNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF 399
Query: 387 QQMWISKQEYDESGPSIVHR 328
+K +Y+E G SI R
Sbjct: 400 GSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 65.7 bits (153), Expect = 7e-12
Identities = 31/118 (26%), Positives = 59/118 (50%)
Frame = -3
Query: 687 EXFRCPEVXFQPSXLGMEACGIHXTTYNSIMKCDVXIRKDLYANTVLSGGTTMYPGIADR 508
E R PEV F PS +G++ GI + + + + ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 507 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 334
+++E+T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -3
Query: 573 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 403
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 402 SLSTFQQMWISKQEYDESGPSIVHRK 325
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -3
Query: 426 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 325
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 434 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 339
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 501 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 391
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 9.1
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -2
Query: 544 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 365
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 364 GV 359
V
Sbjct: 534 AV 535
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,882
Number of Sequences: 5004
Number of extensions: 47994
Number of successful extensions: 133
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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