Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_A08
(781 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 41 2e-04
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 35 0.011
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.43
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 27 3.0
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 3.0
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 26 7.0
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 26 7.0
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 26 7.0
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 25 9.2
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 25 9.2
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 25 9.2
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 40.7 bits (91), Expect = 2e-04
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = -1
Query: 511 FRLYDVERRGAVPASHLRDALHSAGYTVN-AHVLNVLAHRYGTTDGYIQFDDFIMCAVRL 335
F+L+D ++ A+ LR A+ + G+ + VL +L T GY+Q +DF+ +
Sbjct: 43 FKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQMEDFVRV---M 99
Query: 334 KTMIANGEPLENLERELQ 281
I +PLE ++R +
Sbjct: 100 TEKIVERDPLEEIKRAFE 117
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 35.1 bits (77), Expect = 0.011
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = -1
Query: 520 RAVFRLYDVERRGAVPASHLRDALHSAGYTVNAHVLNVLAHRYGTTDGYIQFDDFIMCAV 341
+ F LYD+++ G +P SH+ L S G V L L++ G +F F+ +
Sbjct: 12 KEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNELGDAIDEKKFMSFVSNKL 71
Query: 340 R 338
R
Sbjct: 72 R 72
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.43
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = -2
Query: 546 PCGSICATGGPCSACTTWSGGGPSPPATCVTLCTRPATRSTHTCSTCWRTDTAPPTGTYS 367
P + + P A T+ +G SP + T CT + ST T T PPT T S
Sbjct: 307 PTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSS 366
Query: 366 SMT 358
+ T
Sbjct: 367 TST 369
Score = 29.1 bits (62), Expect = 0.75
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Frame = -2
Query: 546 PCGSICATGGPCSACTTWSGGGPSPPATCVTLCTRPATRSTHTCSTCWRTDTAPPTGTYS 367
P + + P A T+ +G SP + T CT + ST T T PPT + +
Sbjct: 361 PTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSST 420
Query: 366 SM-TS*CAPCVSRP*SQT-ASRWRTSNVNCS 280
+ T+ C S P + T + + NC+
Sbjct: 421 PLTTTNCTTSTSVPYTSTPVTSTPLATTNCT 451
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = -2
Query: 516 PCSACTTWSGGGPSPPATCVTLCTRPATRSTHTCSTCWRTDTAPPTGTYSSMT 358
P S +T + P P T T CT + ST T T PPT T S+ T
Sbjct: 265 PTSTSSTDTNSSPLP--TTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTST 315
Score = 27.1 bits (57), Expect = 3.0
Identities = 21/96 (21%), Positives = 35/96 (36%)
Frame = -2
Query: 582 TAPGDLASKSSSPCGSICATGGPCSACTTWSGGGPSPPATCVTLCTRPATRSTHTCSTCW 403
T+ S S P G+ P T+ S PP + ++ T ++C
Sbjct: 335 TSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCT 394
Query: 402 RTDTAPPTGTYSSMTS*CAPCVSRP*SQTASRWRTS 295
+ + PPTG ++ + P S T + TS
Sbjct: 395 TSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTS 430
Score = 25.8 bits (54), Expect = 7.0
Identities = 18/83 (21%), Positives = 31/83 (37%)
Frame = -2
Query: 582 TAPGDLASKSSSPCGSICATGGPCSACTTWSGGGPSPPATCVTLCTRPATRSTHTCSTCW 403
T+ S S P G+ P T+ S PP + ++ T ++C
Sbjct: 281 TSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCT 340
Query: 402 RTDTAPPTGTYSSMTS*CAPCVS 334
+ + PPTG ++ + P S
Sbjct: 341 TSTSIPPTGNSTTPVTPTVPPTS 363
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 749 APXICKELGVDLQQAQNQPEQVHLNQPQP 663
A IC E V++++A+ VH N+P P
Sbjct: 169 AQPICSECFVEIRRAEPHLPTVHANEPTP 197
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.1 bits (57), Expect = 3.0
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = -2
Query: 564 ASKSSSPCGSICATGGPCSACTTWSGGGPSPPATCVTLCTRPATRS----THTCSTCWRT 397
+S SSS S ++ P ++ T+ S S ++ + +RP++ S T + ST T
Sbjct: 193 SSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFIST 252
Query: 396 DTAPPTGTYSSMTS 355
T P+ + SS +S
Sbjct: 253 VTVTPSSSSSSTSS 266
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = +2
Query: 584 LXQASRSCYGRRPWRXLTL--QLLNR 655
L QA+R YG+ WR +TL QL+++
Sbjct: 757 LEQANRIAYGKTRWRVVTLSGQLIDK 782
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 501 TTWSGGGPSPPATCVTLCTRPATRSTHTCST 409
TT GG P T +T P + + TCST
Sbjct: 283 TTIISGGHLEPVTDITYINNPPSNNIVTCST 313
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1283
Score = 25.8 bits (54), Expect = 7.0
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Frame = -2
Query: 459 VTLCTRPATRSTHTCSTCWRTDTAPPTGTYSS---MTS*CAP-CVSRP*SQTAS---RWR 301
+ + T ST T W T T P TGT S + S AP C S P ++ + +
Sbjct: 1080 IVVPTAGTVTSTTGSGTSWFTTTVPATGTRSGSVIVVSPTAPACSSTPFAECPNLNFNFH 1139
Query: 300 TSNVN 286
+ NVN
Sbjct: 1140 SKNVN 1144
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +2
Query: 419 VCVDRVAGRVQSVTQVAGGDGPPPLHVVQA---EHGPPVAQIDPQG 547
+ V +A +Q TQ +GG P + ++ A E GP + Q+DP G
Sbjct: 109 ILVQEIASVMQESTQ-SGGVRPFGVSLLVAGMDEKGPSLYQVDPSG 153
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 25.4 bits (53), Expect = 9.2
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = -1
Query: 334 KTMIANGEPLENLEREL-QQAXLRRSPERPLVITNTRSTLDLRVETTPPSRSRSG*IAQY 158
K++ A PL N +Q +RR+P L ++N+ T +P S S +
Sbjct: 211 KSLAAARNPLLNRPTSFNRQTRIRRAPPGKLDLSNSNPT-------SPVSPS-----SMA 258
Query: 157 TRKRNRTPP*LRPACMLDPVYTTTSYFKKKTVTVTFEN 44
+R+ PP L+ A P T + K+ T+ F+N
Sbjct: 259 SRRGLNIPPTLKQAVSETPFSTFSDILDAKSGTLNFKN 296
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -3
Query: 203 DYATFSLEEWLNRTVYS*AEPNP 135
DYA F LEEW + +P P
Sbjct: 336 DYAIFQLEEWRKEWCHLWEQPEP 358
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,315
Number of Sequences: 5004
Number of extensions: 59976
Number of successful extensions: 186
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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