Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_A02
         (978 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.4  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   9.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   9.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = +3

Query: 522 PLPRPXPAXPXRXAPXXXGRXXXPXXAPGXP 614
           P P   P  P R +P    +   P   PG P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -3

Query: 280 LTPLPEWSW 254
           L P P+WSW
Sbjct: 108 LQPYPDWSW 116


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -3

Query: 280 LTPLPEWSW 254
           L P P+WSW
Sbjct: 108 LQPYPDWSW 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,619
Number of Sequences: 438
Number of extensions: 1561
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32290713
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)