Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_P22
         (908 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.41 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   2.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   2.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   8.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.2 bits (55), Expect = 0.41
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
 Frame = +2

Query: 572  RGICMYTLXGKPAEFKRIESPLKHQHRCVSIFKD-------MKSKQPTGFALGNVXGPVA 730
            R I  YTL G  +  K   S L+ Q R  S+FKD       M    P  ++ G V  P  
Sbjct: 1223 RNINTYTLDGVGSVEKTGVSTLRGQERQRSLFKDSSPATALMLQHAPPAYSCGTVSVPQQ 1282

Query: 731  IQYVNPTNP 757
             Q + P++P
Sbjct: 1283 -QQLPPSSP 1290


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 491 PSMTLNLTERAYCADVEYP 547
           P   +N+T + YC D+E P
Sbjct: 314 PGTGINVTLKGYCIDMEVP 332


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 396 FTGASCAATCIVWLAAKSQHFTLLSVEAIKTFVPSSCQATS 274
           F G +   TCI+WLA    +F   +  A +T + + C A S
Sbjct: 707 FIGFTMYTTCIIWLAFVPIYFG--TGNAHETQITTLCVAIS 745


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 396 FTGASCAATCIVWLAAKSQHFTLLSVEAIKTFVPSSCQATS 274
           F G +   TCI+WLA    +F   +  A +T + + C A S
Sbjct: 797 FIGFTMYTTCIIWLAFVPIYFG--TGNAHETQITTLCVAIS 835


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 207 HLTWQSQLPAIR 172
           HL W S +P+IR
Sbjct: 470 HLVWNSWMPSIR 481


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,805
Number of Sequences: 438
Number of extensions: 5689
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)