Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_P21
(853 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 337 7e-93
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 334 7e-92
11_01_0710 - 5830475-5830595,5831498-5834124 32 0.67
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 31 1.2
03_05_0021 + 19883445-19883523,19884031-19884449,19884489-19884725 30 2.0
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748... 29 3.6
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 29 3.6
12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272 29 4.7
01_05_0125 - 18382402-18382761,18382863-18383036 29 6.2
01_07_0184 + 41846416-41847132 28 8.2
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 337 bits (828), Expect = 7e-93
Identities = 154/259 (59%), Positives = 194/259 (74%), Gaps = 1/259 (0%)
Frame = +1
Query: 37 QKISAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRP 216
+K PRHGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE ++P
Sbjct: 4 RKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKP 63
Query: 217 GSKINKKEIVEAVTIIETPPMVFVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWY 396
GSK++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW
Sbjct: 64 GSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWC 123
Query: 397 XXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIME 573
+ + G+K I+ +KM +Y S+VRVIAHTQ++ +K +QKKAH+ME
Sbjct: 124 KSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLME 183
Query: 574 IQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTKGKXYKGVTFSLAHKEXTP 753
IQ+NGGTI DKV + + EK IPVD+VF +DEMID IGVTKGK Y+GV
Sbjct: 184 IQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243
Query: 754 *KHKGLRKVACIGPWHPSR 810
H+GLRKVACIG WHP+R
Sbjct: 244 KTHRGLRKVACIGAWHPAR 262
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 334 bits (820), Expect = 7e-92
Identities = 153/259 (59%), Positives = 193/259 (74%), Gaps = 1/259 (0%)
Frame = +1
Query: 37 QKISAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRP 216
+K PRHGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE ++P
Sbjct: 4 RKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEKP 63
Query: 217 GSKINKKEIVEAVTIIETPPMVFVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWY 396
GSK++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW
Sbjct: 64 GSKLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWC 123
Query: 397 XXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIME 573
+ + G+K I+ +KM +Y SVVRVI HTQ++ +K +QKKAH+ME
Sbjct: 124 KSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLME 183
Query: 574 IQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTKGKXYKGVTFSLAHKEXTP 753
IQ+NGGTI DKV + + EK IPVD+VF +DEMID IGVTKGK Y+GV
Sbjct: 184 IQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243
Query: 754 *KHKGLRKVACIGPWHPSR 810
H+GLRKVACIG WHP+R
Sbjct: 244 KTHRGLRKVACIGAWHPAR 262
>11_01_0710 - 5830475-5830595,5831498-5834124
Length = 915
Score = 31.9 bits (69), Expect = 0.67
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 683 QSIISSWANTESTGIGFSRCSLAHFTLSSMVPPLSWISIM 564
+S+ISSW + TG S CS+ + + PLS S++
Sbjct: 650 ESVISSWGGSVHTGTSSSSCSVTNLVVKFCTLPLSQWSLL 689
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 462 NRKRFQEDDPLL*CCKSHCPHSNEAVKTATKEGSHYGNP 578
N +RF +DPLL CC H P+ A T + + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333
>03_05_0021 + 19883445-19883523,19884031-19884449,19884489-19884725
Length = 244
Score = 30.3 bits (65), Expect = 2.0
Identities = 24/87 (27%), Positives = 39/87 (44%)
Frame = +1
Query: 442 DELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAR 621
DE R ++ D M+R+ + V + KLLKQ ++ + G I + W +
Sbjct: 74 DEPPRLNLPSDGFIMVRHAAAVHRDVYDLQKLLKQEPLDNRMIVDAI--GVI--TLSW-K 128
Query: 622 EHLEKPIPVDSVFAQDEMIDCIGVTKG 702
EH +P P D V ++ D +G G
Sbjct: 129 EHYVEPRPEDLVKLMSDLEDLVGFLSG 155
>04_04_1477 +
33873976-33874080,33874433-33874544,33874777-33874874,
33875548-33876261,33876348-33876518,33876955-33877011,
33877096-33878718
Length = 959
Score = 29.5 bits (63), Expect = 3.6
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +1
Query: 562 HIMEIQLNGGTIEDKVKWAREHLEKPIPVDS 654
H++E + N ++++K+K +H E +P+DS
Sbjct: 460 HLLEDRENNESVDEKIKGDAQHEENTLPLDS 490
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 535 LLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMI 678
L Q K+ ++E +++ ++ D+V L KP PV F DE++
Sbjct: 2664 LTSQHGKRIAVIENEVHDFSMPDRVNAINPGLAKPGPVIETFCSDELV 2711
>12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272
Length = 786
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 740 KXLPRKNTRVLGKLPALDLGILLGCRHCXSCWSXRFHP 853
K LPR N V+G + L++G G H W HP
Sbjct: 199 KILPRINGSVVGGIVKLNVGNSEGSSHMEKSWIAGLHP 236
>01_05_0125 - 18382402-18382761,18382863-18383036
Length = 177
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 376 DVDSLQTYAPPRQSTERVVHEGSQCIQQHRQKPSE 272
++ +L PPR ST R+V E C+ + R + +E
Sbjct: 47 ELGALLPNLPPRASTTRIVEEAIACVGELRARTAE 81
>01_07_0184 + 41846416-41847132
Length = 238
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = +1
Query: 217 GSKINKKEIVEAVTIIETPPMVFVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFY 384
G ++ + E++ I+E F + + GLRA WA + + C + F+
Sbjct: 64 GDDDHRAAVCESLVIVEYVDEAFPAPLLLLPADPGLRAAARFWARFIDDKCTKPFW 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,974,208
Number of Sequences: 37544
Number of extensions: 517741
Number of successful extensions: 1177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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