Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_P13
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    28   1.5  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    28   1.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.6  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   7.8  

>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 164 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNR 66
           Y    ES + D+ +  SH+ A +I Q  R+G R
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 223 HANIRESESTVRIQADLQLDELDRQTTELERRGVGLQH 336
           H N R +   +R+   LQLD  D++  +L  +G+ + H
Sbjct: 69  HLNARNARGYLRLGKLLQLDGFDKKADQLYTQGLRMVH 106


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 715 PPXXPPGXXXXXPXXPXPXPP 777
           PP  PPG     P  P P PP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 6/45 (13%)
 Frame = +2

Query: 716 PXXPPRGXXPXXXGAPXPXPR------GXXPPAXTPXXRGXGFPP 832
           P  PP    P    AP P P       G  PP   P   G G PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 46   MSTTYIILLPFLLTCAIASAAECENATSLS 135
            +S TYIILLPF   C     A  +++  +S
Sbjct: 1023 LSKTYIILLPFQSLCPGGKQANHQSSEKMS 1052


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,362
Number of Sequences: 5004
Number of extensions: 45563
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)