Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_P10
         (1062 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.090
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.36 
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    26   7.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.090
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 896 PPPPPXXXGGGXPPPP 943
           PPPPP   G G PPPP
Sbjct: 764 PPPPPGVAGAGPPPPP 779



 Score = 30.3 bits (65), Expect = 0.48
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 896 PPPPPXXXGGGXPPPP 943
           PPPPP    G  PPPP
Sbjct: 763 PPPPPPGVAGAGPPPP 778



 Score = 29.5 bits (63), Expect = 0.84
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 692 PPPPPPXXXXXXXPPPP 742
           PPPPPP       PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPP 778



 Score = 29.5 bits (63), Expect = 0.84
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 692 PPPPPPXXXXXXXPPPP 742
           PPPPPP       PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPP 779



 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 896 PPPPPXXXGGGXPPPP 943
           P PPP    GG PPPP
Sbjct: 750 PVPPPAPIMGGPPPPP 765


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.7 bits (66), Expect = 0.36
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 692 PPPPPPXXXXXXXPPPPXXXG 754
           PPPPPP       PPPP   G
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPG 31



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 692 PPPPPPXXXXXXXPPPP 742
           PPPPPP        PPP
Sbjct: 10  PPPPPPPGFEPPSQPPP 26



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 896 PPPPPXXXGGGXPPPP 943
           PPPPP       PPPP
Sbjct: 12  PPPPPGFEPPSQPPPP 27



 Score = 23.0 bits (47), Expect(2) = 8.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 989 PPPPPXXXXXKKKK 948
           PPPPP     KK+K
Sbjct: 24  PPPPPPPGYVKKRK 37



 Score = 21.0 bits (42), Expect(2) = 8.4
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 992 PPPPPP 975
           PPPPPP
Sbjct: 10  PPPPPP 15


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 899 PPPPXXXGGGXPPP 940
           PPPP   G G PPP
Sbjct: 129 PPPPAGFGRGAPPP 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,449
Number of Sequences: 5004
Number of extensions: 41156
Number of successful extensions: 288
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 559212080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)