Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_P09
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    27   2.5  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   2.5  

>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 78  YDTASTTLAVNNEMSSPVKVGRGVRQGDPLSP 173
           YDT    +A+  E S   KVG  ++ G P  P
Sbjct: 458 YDTQDAIVALQEEASEGYKVGLDLKTGMPFDP 489


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +3

Query: 369 CRKSAVLSMIPDGHRKKHHYLTERT-FNIGGKPLRQVSCVE-RWRYLGVDFEASGCVTLE 542
           C ++ VLS   D H   HH ++     NI   P   +  ++  W+ L + F    C  L 
Sbjct: 226 CSRNEVLSGTNDSHDSIHHIISNNAQLNI---PQEYIDVLDLDWKSLELLFVREFCAALG 282

Query: 543 HSISSALNNISRA 581
            S+ S L+ +  A
Sbjct: 283 MSLESPLDIVVNA 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,540,538
Number of Sequences: 5004
Number of extensions: 73677
Number of successful extensions: 195
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)