Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_P09
(848 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 50 3e-06
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 43 3e-04
02_02_0604 - 12064451-12065683,12065729-12065827,12065858-120659... 43 3e-04
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 42 6e-04
12_01_0024 + 178539-179418,179593-179938,180127-180244 42 8e-04
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 40 0.003
03_04_0145 + 17683681-17683982,17686058-17686145 33 0.22
02_01_0473 - 3403547-3404241,3404455-3404983,3405299-3405477,340... 32 0.66
12_01_0710 - 6155357-6155708,6156354-6156604,6158874-6158987 31 0.88
05_03_0212 + 10260690-10261272,10261921-10262435,10262446-102625... 31 0.88
04_03_0596 - 17775203-17775247,17775772-17775830,17776093-17776609 31 1.2
05_03_0062 - 7917596-7918129,7918279-7918447,7919007-7919182,791... 30 2.7
11_01_0462 + 3574200-3574552,3574619-3574760,3574867-3574878 29 4.7
10_08_0367 - 17236838-17236852,17237051-17237152,17237246-17238283 29 4.7
05_07_0236 - 28582157-28582552,28582639-28582911,28583324-285835... 29 4.7
07_03_1182 - 24610862-24611637,24612223-24612340,24612441-246141... 29 6.2
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 29 6.2
03_04_0045 + 16772835-16772876,16772965-16773118,16774219-167742... 28 8.2
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 49.6 bits (113), Expect = 3e-06
Identities = 24/72 (33%), Positives = 44/72 (61%)
Frame = +3
Query: 9 EALVELLRLRGMPEQFCGYIAHLYDTASTTLAVNNEMSSPVKVGRGVRQGDPLSPILFNV 188
++L ++L ++G P+ + +I +L T+ + + ++ + +G+RQGDPLSP LF +
Sbjct: 53 QSLFQILSVKGFPDNWISWIKNLLQTSKSAVLLHGIPGKWITCKKGLRQGDPLSPYLFIL 112
Query: 189 VMDLILASLPER 224
V D +L L ER
Sbjct: 113 VAD-VLQRLLER 123
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 43.2 bits (97), Expect = 3e-04
Identities = 24/71 (33%), Positives = 40/71 (56%)
Frame = +3
Query: 12 ALVELLRLRGMPEQFCGYIAHLYDTASTTLAVNNEMSSPVKVGRGVRQGDPLSPILFNVV 191
+L ++L +RG PE + +I L ++ + + +N + +G+ QGDPLS LF +V
Sbjct: 1069 SLFKILAVRGFPENWISWIKGLLSSSKSAVLLNGVPGRWICCKKGLLQGDPLSSYLFILV 1128
Query: 192 MDLILASLPER 224
D +L L ER
Sbjct: 1129 AD-VLQRLLER 1138
>02_02_0604 -
12064451-12065683,12065729-12065827,12065858-12065955,
12066782-12066924,12067233-12067729
Length = 689
Score = 43.2 bits (97), Expect = 3e-04
Identities = 25/75 (33%), Positives = 42/75 (56%)
Frame = +3
Query: 3 LDEALVELLRLRGMPEQFCGYIAHLYDTASTTLAVNNEMSSPVKVGRGVRQGDPLSPILF 182
L ++ + L+ + C + +L + T + +N +S P K RG+RQGDPLSP+LF
Sbjct: 187 LPSSICTMYNLQTLRLNRCKKLRYLLE--ETRIDINGTLSDPFKPMRGLRQGDPLSPLLF 244
Query: 183 NVVMDLILASLPERV 227
V+ + A L ++V
Sbjct: 245 --VLKAMSAGLLDKV 257
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 41.9 bits (94), Expect = 6e-04
Identities = 20/64 (31%), Positives = 39/64 (60%)
Frame = +3
Query: 12 ALVELLRLRGMPEQFCGYIAHLYDTASTTLAVNNEMSSPVKVGRGVRQGDPLSPILFNVV 191
A++ +++ G P ++ ++ ++ TAS+ + +N + K RGVRQG PLS +LF +
Sbjct: 469 AILSVMQHMGFPLKWIEWVQMVFSTASSAVLLNGVPGNSFKCRRGVRQGVPLSLLLFVLG 528
Query: 192 MDLI 203
+L+
Sbjct: 529 AELL 532
>12_01_0024 + 178539-179418,179593-179938,180127-180244
Length = 447
Score = 41.5 bits (93), Expect = 8e-04
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +3
Query: 75 LYDTASTTLAVNNEMSSPVKVGRGVRQGDPLSPILF 182
++ TAS+ + +N + K RGVRQGDPLSP+LF
Sbjct: 2 VFSTASSAVLLNGVPGNSFKCRRGVRQGDPLSPLLF 37
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 24 LLRLRGMPEQFCGYIAHLYDTASTTLAVNNEMSSPVKVGRGVRQGDPLSPILF 182
L+RL G + + + + + +N E++ V RG+RQGDP+SP LF
Sbjct: 275 LMRL-GFEQDWINTVMRCVTSTRYAIRINGELTDTVVPSRGIRQGDPISPYLF 326
>03_04_0145 + 17683681-17683982,17686058-17686145
Length = 129
Score = 33.5 bits (73), Expect = 0.22
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +3
Query: 141 RGVRQGDPLSPILFNVVMDL 200
RGVRQGDPLSP+LF + +L
Sbjct: 104 RGVRQGDPLSPLLFVIGAEL 123
>02_01_0473 -
3403547-3404241,3404455-3404983,3405299-3405477,
3405868-3405952,3406136-3406482,3407061-3407159,
3408135-3408636
Length = 811
Score = 31.9 bits (69), Expect = 0.66
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3
Query: 141 RGVRQGDPLSPILFNVVMD 197
RG+RQGDPLSP LF + D
Sbjct: 279 RGLRQGDPLSPYLFLFIAD 297
>12_01_0710 - 6155357-6155708,6156354-6156604,6158874-6158987
Length = 238
Score = 31.5 bits (68), Expect = 0.88
Identities = 15/57 (26%), Positives = 32/57 (56%)
Frame = +3
Query: 27 LRLRGMPEQFCGYIAHLYDTASTTLAVNNEMSSPVKVGRGVRQGDPLSPILFNVVMD 197
L+ R P ++ ++ L T+++ + + + ++ RG+R G+PLS +LF + D
Sbjct: 37 LQQRAFPPRWRNWLGALLSTSTSQVVLIGILVHRIQHCRGLRLGNPLSTLLFILAFD 93
>05_03_0212 +
10260690-10261272,10261921-10262435,10262446-10262569,
10262840-10263042,10263169-10263240,10264905-10265007,
10265350-10265582
Length = 610
Score = 31.5 bits (68), Expect = 0.88
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +3
Query: 141 RGVRQGDPLSPILFNVVMDLI 203
RGVRQGDPL P+LF + +L+
Sbjct: 548 RGVRQGDPLPPLLFVLGAELL 568
>04_03_0596 - 17775203-17775247,17775772-17775830,17776093-17776609
Length = 206
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 147 PLVPLLQGCSFHCSRLRWWTPYRIGEQCSRR 55
P P L GC+ C L + P+ IG+ C R+
Sbjct: 25 PTAPTLAGCNTSCGNLTFEYPFGIGQGCFRQ 55
>05_03_0062 -
7917596-7918129,7918279-7918447,7919007-7919182,
7919235-7919360,7920196-7920342
Length = 383
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 99 LAVNNEMSSPVKVGRGVRQGDPLSPILF 182
L ++N + + RG+RQGDP+SP LF
Sbjct: 40 LYLSNILDHEIIPIRGLRQGDPISPYLF 67
>11_01_0462 + 3574200-3574552,3574619-3574760,3574867-3574878
Length = 168
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 519 PQNRHQDIATAQHNSPA*AAYLQY*RFAQSGSDASCGGHP 400
PQNRH++I + Q + A Q RF GS C HP
Sbjct: 6 PQNRHREIPSLQQSQREATAARQTRRF--EGSAGQCDPHP 43
>10_08_0367 - 17236838-17236852,17237051-17237152,17237246-17238283
Length = 384
Score = 29.1 bits (62), Expect = 4.7
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Frame = -3
Query: 429 GSDASCGG--------HPVS*TEPRFSCNSGVGPSAYRHSPQQRWTPASLPSTPQAGLG- 277
GS ASCGG P S P S ++G+G SA+ SP+ PA+ + G
Sbjct: 146 GSTASCGGAGSGFLPPDPSSSLTPMGSKSNGIGASAFLASPR----PATRSANDGGGFAF 201
Query: 276 -RQHRPERT 253
R PERT
Sbjct: 202 FRSPEPERT 210
>05_07_0236 -
28582157-28582552,28582639-28582911,28583324-28583560,
28583653-28583694,28583782-28583964,28584393-28584524,
28585605-28586057
Length = 571
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -2
Query: 592 GLRGALEMLFRALLILCSNVTHPEASKSTPRYRHRSTQLTCL 467
G++G +L LL+LCSNV+ +A ++R++ T L
Sbjct: 4 GIKGLTFLLLLVLLVLCSNVSLSDARSGKHWRQNRASSSTLL 45
>07_03_1182 -
24610862-24611637,24612223-24612340,24612441-24614120,
24614253-24614320,24615370-24615550
Length = 940
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 339 HSPQQRWTPASLPSTPQA 286
HS ++ W P SLP TPQ+
Sbjct: 687 HSSEECWNPNSLPDTPQS 704
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = -3
Query: 360 VGPSAYRHSPQQRWTPASLPSTPQAGLGRQHRPERTRVPSP 238
VGPSA + + QQ PAS P A R+ P RV SP
Sbjct: 241 VGPSAEKATKQQPRKPAS-PQRKPAPSPRRRSPPSRRVESP 280
>03_04_0045 +
16772835-16772876,16772965-16773118,16774219-16774248,
16774752-16774882,16774960-16775034,16775315-16775482,
16775837-16775984,16776808-16776953
Length = 297
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 345 RQMGLRLNCRKSAVLSMIPDGHRKKHHYLTERTFNIGGKPLRQVSCVER 491
RQ +L + AV P H +HH+ +R GG+ L + +E+
Sbjct: 183 RQTRAKLEAQNKAVKGRKPYLHESRHHHAMKRARGSGGRFLTKKELLEQ 231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,023,382
Number of Sequences: 37544
Number of extensions: 606143
Number of successful extensions: 1747
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1746
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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