Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_P09
         (848 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Dros...   156   4e-38
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ...    33   0.65 
BT009977-1|AAQ22446.1| 1287|Drosophila melanogaster RE56428p pro...    30   4.6  
AJ249606-1|CAB56505.1| 1287|Drosophila melanogaster NPC1 protein...    30   4.6  
AE014134-1780|AAF52874.2| 1287|Drosophila melanogaster CG5722-PA...    30   4.6  

>X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein (
            Drosophila melanogasterDNA for type II retrotransposable
            element  R2Dm.  ).
          Length = 1057

 Score =  156 bits (378), Expect = 4e-38
 Identities = 90/265 (33%), Positives = 137/265 (51%), Gaps = 2/265 (0%)
 Frame = +3

Query: 12   ALVELLRLRGMPEQFCGYIAHLYDTASTTLAVNNEMSSPVKVGRGVRQGDPLSPILFNVV 191
            ++ + LR  G P+ F  Y+ + Y+   T+L  +   S      RGV+QGDPLSPILFN+V
Sbjct: 494  SIYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQGDPLSPILFNLV 553

Query: 192  MDLILASLPERVGYRLEMEXXXXXXXXXXXXXXXGSKVGMQESISAVDCVGRQMGLRLNC 371
            MD +L +LP  +G ++                   +++G+Q  +         +GL+LN 
Sbjct: 554  MDRLLRTLPSEIGAKVGNAITNAAAFADDLVLFAETRMGLQVLLDKTLDFLSIVGLKLNA 613

Query: 372  RKSAVLSMIPDGHRKKHHYLTERTFNIGGKPLRQVSCVERWRYLGVDFEASGCVTLE--H 545
             K   +  I    ++K   L  ++F +G   +  +   + W+YLG++F A+G V      
Sbjct: 614  DKCFTVG-IKGQPKQKCTVLEAQSFYVGSSEIPSLKRTDEWKYLGINFTATGRVRCNPAE 672

Query: 546  SISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLXMLDVQIRKAVGQWL 725
             I   L  +++APLKPQQRL  LR  LIP+  H   LG+++   L   D  IR  V +WL
Sbjct: 673  DIGPKLQRLTKAPLKPQQRLFALRTVLIPQLYHKLALGSVAIGVLRKTDKLIRYYVRRWL 732

Query: 726  RLPADVPKAYYHXXXQDGGLTIPSV 800
             LP DVP A+ H   + GGL IPS+
Sbjct: 733  NLPLDVPIAFVHAPPKSGGLGIPSL 757


>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
           protein.
          Length = 1219

 Score = 32.7 bits (71), Expect = 0.65
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 63  YIAHLYDTASTTLAVNNEMSSPVKVGRGVRQGDPLSPILFNVVMD 197
           YI +       T+ V    SSP+ +  G+ QG P+S ILF +  +
Sbjct: 605 YIKNFMSNRKITVRVGPHTSSPLPLFNGIPQGSPISVILFLIAFN 649


>BT009977-1|AAQ22446.1| 1287|Drosophila melanogaster RE56428p protein.
          Length = 1287

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +3

Query: 12   ALVELLRLRGMPEQFCGYIAHLYDTASTTLAVNNEMSSPVKVGRGVRQGDPLS 170
            +LV L+   G+  +FC ++ H + T+ +   ++    S  K+G  +  G  L+
Sbjct: 1162 SLVNLVMAVGISVEFCSHLVHSFATSKSVSQIDRAADSLSKMGSSIFSGITLT 1214


>AJ249606-1|CAB56505.1| 1287|Drosophila melanogaster NPC1 protein
            protein.
          Length = 1287

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +3

Query: 12   ALVELLRLRGMPEQFCGYIAHLYDTASTTLAVNNEMSSPVKVGRGVRQGDPLS 170
            +LV L+   G+  +FC ++ H + T+ +   ++    S  K+G  +  G  L+
Sbjct: 1162 SLVNLVMAVGISVEFCSHLVHSFATSKSVSQIDRAADSLSKMGSSIFSGITLT 1214


>AE014134-1780|AAF52874.2| 1287|Drosophila melanogaster CG5722-PA
            protein.
          Length = 1287

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +3

Query: 12   ALVELLRLRGMPEQFCGYIAHLYDTASTTLAVNNEMSSPVKVGRGVRQGDPLS 170
            +LV L+   G+  +FC ++ H + T+ +   ++    S  K+G  +  G  L+
Sbjct: 1162 SLVNLVMAVGISVEFCSHLVHSFATSKSVSQIDRAADSLSKMGSSIFSGITLT 1214


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,889,512
Number of Sequences: 53049
Number of extensions: 978556
Number of successful extensions: 3074
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3069
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4065385896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)