Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_P05
(862 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.85
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 2.0
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 2.0
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 7.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 7.9
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.1 bits (62), Expect = 0.85
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Frame = +1
Query: 211 PPPKXXXGGTPPPXPQKXF---XPPXPP 285
PPP GG PPP P PP PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +3
Query: 522 PPPSRFXNXXXXPPXPPLXGXPXAXXPPAPXP 617
PPP+ PP PP G A PP P P
Sbjct: 752 PPPAPIMGGPPPPPPPP--GVAGAGPPPPPPP 781
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 190 GAPXXXXPPPKXXXGGTPPPXP 255
G P PPP G PPP P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPP 780
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = -2
Query: 507 PPXXPPXXXXXTAXPPXQGXXXXKXXXGXXPPPPP 403
PP PP T P G PPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = -2
Query: 510 PPPXXPPXXXXXTAXPPXQGXXXXKXXXGXXPPPPP 403
PPP P A P G PPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 211 PPPKXXXGGTPPPXPQKXFXPPXPP 285
PPP+ G+ P PQ PP PP
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/58 (27%), Positives = 18/58 (31%)
Frame = -2
Query: 510 PPPXXPPXXXXXTAXPPXQGXXXXKXXXGXXPPPPPGXKKXXXXAXPXKXKKNPPXFP 337
PPP PP P G PPPPP P + + PP P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPP---PPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 26.2 bits (55), Expect = 6.0
Identities = 15/52 (28%), Positives = 15/52 (28%)
Frame = +2
Query: 494 GXXGGGXXXPPPXSIXX*XXXPPXPAXRXXAPRXPPPXXXXXXXXXPPPXXS 649
G PPP P P AP PPP PPP S
Sbjct: 330 GSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSS 381
Score = 26.2 bits (55), Expect = 6.0
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +3
Query: 504 GXGXXNPPPSRFXNXXXXPPXPPLXGXPXAXXPPAPXPXXXXR 632
G PPP R P PPL PPAP P R
Sbjct: 357 GRSAPPPPPPRSAPSTGRQP-PPLSSSRAVSNPPAPPPAIPGR 398
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +2
Query: 521 PPPXSIXX*XXXPPXPAXRXXAPRXPPPXXXXXXXXXPPP 640
PPP S+ PP PA AP PPP P P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAP--PPPLPASSAPSVPNP 1746
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +1
Query: 196 PXXXXPPPKXXXGGTPPPXPQKXFXPPXPPXFXXKXK 306
P PPP G PP P PP PP + K K
Sbjct: 5 PPGNPPPPPPPPGFEPPSQP----PPPPPPGYVKKRK 37
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.9 bits (59), Expect = 2.0
Identities = 24/79 (30%), Positives = 24/79 (30%)
Frame = -2
Query: 426 GXXPPPPPGXKKXXXXAXPXKXKKNPPXFPXXGGGXPXXXFXFXXKXGGXGGXKXFLGXG 247
G PP P G F GG F GG GG G G
Sbjct: 198 GGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLG--GFG 255
Query: 246 GGXPPPXXFGGGXXXXWGP 190
GG P FGGG GP
Sbjct: 256 GG---PGGFGGGPGGHGGP 271
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = -2
Query: 300 FXXKXGGXGGXKXFLGXGGGXPP-PXXFGG 214
F + GG F G GG PP P FGG
Sbjct: 180 FHHRGHNGGGFGGFGGGSGGPPPGPGGFGG 209
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/34 (32%), Positives = 12/34 (35%)
Frame = +3
Query: 510 GXXNPPPSRFXNXXXXPPXPPLXGXPXAXXPPAP 611
G PPP P PP+ P PP P
Sbjct: 204 GEHMPPPPMHHKPGEHMPPPPMHHEPGEHMPPPP 237
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/34 (32%), Positives = 12/34 (35%)
Frame = +3
Query: 510 GXXNPPPSRFXNXXXXPPXPPLXGXPXAXXPPAP 611
G PPP P PP+ P PP P
Sbjct: 217 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 250
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/34 (32%), Positives = 12/34 (35%)
Frame = +3
Query: 510 GXXNPPPSRFXNXXXXPPXPPLXGXPXAXXPPAP 611
G PPP P PP+ P PP P
Sbjct: 230 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 263
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/34 (32%), Positives = 12/34 (35%)
Frame = +3
Query: 510 GXXNPPPSRFXNXXXXPPXPPLXGXPXAXXPPAP 611
G PPP P PP+ P PP P
Sbjct: 243 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 276
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/34 (32%), Positives = 12/34 (35%)
Frame = +3
Query: 510 GXXNPPPSRFXNXXXXPPXPPLXGXPXAXXPPAP 611
G PPP P PP+ P PP P
Sbjct: 256 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 289
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/34 (32%), Positives = 12/34 (35%)
Frame = +3
Query: 510 GXXNPPPSRFXNXXXXPPXPPLXGXPXAXXPPAP 611
G PPP P PP+ P PP P
Sbjct: 269 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 302
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/34 (32%), Positives = 12/34 (35%)
Frame = +3
Query: 510 GXXNPPPSRFXNXXXXPPXPPLXGXPXAXXPPAP 611
G PPP P PP+ P PP P
Sbjct: 282 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 315
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/34 (32%), Positives = 12/34 (35%)
Frame = +3
Query: 510 GXXNPPPSRFXNXXXXPPXPPLXGXPXAXXPPAP 611
G PPP P PP+ P PP P
Sbjct: 295 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 328
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/34 (32%), Positives = 12/34 (35%)
Frame = +3
Query: 510 GXXNPPPSRFXNXXXXPPXPPLXGXPXAXXPPAP 611
G PPP P PP+ P PP P
Sbjct: 308 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 341
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/35 (31%), Positives = 12/35 (34%)
Frame = -2
Query: 507 PPXXPPXXXXXTAXPPXQGXXXXKXXXGXXPPPPP 403
PP P PP + K G P PPP
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,033,963
Number of Sequences: 5004
Number of extensions: 30729
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -