Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_P02
(904 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 30 0.39
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 28 1.6
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace... 27 3.6
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 27 4.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 8.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 8.4
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 8.4
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 8.4
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 8.4
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 30.3 bits (65), Expect = 0.39
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 223 VRVHRANTGRSSNELDRQTTELERR 297
+R H+ + GR+ ELDR+ T+L++R
Sbjct: 18 LRAHQRSLGRAERELDRERTKLDQR 42
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -2
Query: 903 PXXXPPPXPXPPPXXPPP 850
P PPP P PPP P P
Sbjct: 802 PFKAPPPAPLPPPAPPLP 819
>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
N-acetylglucosaminyltransferase Alg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 146 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 48
Y ES + D+ + SH+ A +I Q R+G +
Sbjct: 63 YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/56 (23%), Positives = 24/56 (42%)
Frame = -3
Query: 173 WSPGGESRSYVARSESIMRDSDVAFSHSAALAIAQVRRNGNKNNISRRHFMTTDLF 6
WS G + +ESI+ + +L ++ R + +N S H + T +F
Sbjct: 242 WSHGLTPEVFWQNTESILTCPEEQLEQKISLLLSSTRNSPTMSNSSLTHLLPTPIF 297
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 8.4
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -2
Query: 903 PXXXPPPXPXPPPXXPPP 850
P PPP PPP PP
Sbjct: 1705 PTPPPPPMSVPPPPSAPP 1722
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = -2
Query: 903 PXXXPPPXPXPPPXXPPPXXQXRXXESXRPPAVXPXXRXGTRAGTR 766
P PP P PP PPP S P GTR
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDRSALLQQIHTGTR 1761
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 8.4
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -2
Query: 903 PXXXPPPXPXPPPXXPP 853
P PPP P PP PP
Sbjct: 5 PPGNPPPPPPPPGFEPP 21
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 8.4
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = -3
Query: 209 HVSNAGSG*LRFWSPGGESRSYVARSESIMR----DSDVAFSHSAALAIAQVRRNGNKNN 42
H+S G R ++ GG SY A+ + R D+ V ++ SAAL + + R + ++
Sbjct: 433 HLSGMTMGMRRMFTQGG---SYSAQERGLCRLEQKDTVVRYAQSAALYLIFLLRRPSADS 489
Query: 41 ISRRH 27
RRH
Sbjct: 490 GIRRH 494
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 8.4
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = -3
Query: 209 HVSNAGSG*LRFWSPGGESRSYVARSESIMR----DSDVAFSHSAALAIAQVRRNGNKNN 42
H+S G R ++ GG SY A+ + R D+ V ++ SAAL + + R + ++
Sbjct: 433 HLSGMTMGMRRMFTQGG---SYSAQERGLCRLEQKDTVVRYAQSAALYLIFLLRRPSADS 489
Query: 41 ISRRH 27
RRH
Sbjct: 490 GIRRH 494
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/50 (30%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Frame = -2
Query: 903 PXXXPPPXPXPPP----XXPPPXXQXRXXESXRPPAVXPXXRXGTRAGTR 766
P P P P PPP PPP PP P + G+R
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791
Score = 25.8 bits (54), Expect = 8.4
Identities = 16/54 (29%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Frame = -2
Query: 903 PXXXPPPXPXP--PPXXPPPXXQXRXXESXRPPAVXPXXRXGTRAGTRXPXXPP 748
P PPP P PP PPP PP G+R P P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,729
Number of Sequences: 5004
Number of extensions: 50684
Number of successful extensions: 206
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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