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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_O21
         (858 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongatio...    34   0.76 
AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription ...    34   0.76 
AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongatio...    34   0.76 
BC065530-1|AAH65530.1| 1003|Homo sapiens methyl-CpG binding doma...    33   1.0  
AK056399-1|BAB71176.1| 1003|Homo sapiens protein ( Homo sapiens ...    33   1.0  
AB067474-1|BAB67780.1|  967|Homo sapiens KIAA1887 protein protein.     33   1.0  
U91543-1|AAC39923.1| 2000|Homo sapiens zinc-finger helicase prot...    32   2.3  
BC110648-1|AAI10649.1|  661|Homo sapiens CHD3 protein protein.         32   2.3  
AK127507-1|BAC87013.1|  130|Homo sapiens protein ( Homo sapiens ...    32   2.3  
AF006515-1|AAB87383.1| 1944|Homo sapiens CHD3 protein.                 32   2.3  
X89894-1|CAA61984.1|  443|Homo sapiens nuclear receptor protein.       31   4.1  
S81243-1|AAB36006.1|  684|Homo sapiens CHN protein.                    31   4.1  
D78579-1|BAA11419.1|  626|Homo sapiens neuron derived orphan rec...    31   4.1  
AL359710-3|CAI95139.1|  443|Homo sapiens nuclear receptor subfam...    31   4.1  
AL359710-2|CAI95138.1|  626|Homo sapiens nuclear receptor subfam...    31   4.1  
AL359710-1|CAM16648.1|  637|Homo sapiens nuclear receptor subfam...    31   4.1  
AL358937-4|CAI95320.1|  626|Homo sapiens nuclear receptor subfam...    31   4.1  
AL358937-3|CAM22558.1|  637|Homo sapiens nuclear receptor subfam...    31   4.1  
X86019-1|CAA60014.1|  494|Homo sapiens SH3-domain interacting pr...    31   7.1  
AF031588-1|AAC03767.1|  503|Homo sapiens WASP interacting protei...    31   7.1  
M94131-1|AAA59163.1| 1270|Homo sapiens mucin protein.                  30   9.4  
M74027-1|AAA59875.1|  573|Homo sapiens mucin protein.                  30   9.4  
L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein.                  30   9.4  
BC117331-1|AAI17332.1|  346|Homo sapiens selenoprotein V protein.      30   9.4  
AY324825-1|AAP85542.1|  346|Homo sapiens selenoprotein V protein.      30   9.4  

>BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongation
           regulator 1 protein.
          Length = 1077

 Score = 33.9 bits (74), Expect = 0.76
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = +2

Query: 536 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPG-----LKPPLSSXAPSA 700
           P+PA+S TST SS P   T TT   TS++    TP  ++  P        P +S   P+ 
Sbjct: 266 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAVSVATPTVSVSTPAP 324

Query: 701 YLTP 712
             TP
Sbjct: 325 TATP 328


>AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription
           factor CA150 protein.
          Length = 1098

 Score = 33.9 bits (74), Expect = 0.76
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = +2

Query: 536 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPG-----LKPPLSSXAPSA 700
           P+PA+S TST SS P   T TT   TS++    TP  ++  P        P +S   P+ 
Sbjct: 266 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAVSVATPTVSVSTPAR 324

Query: 701 YLTP 712
             TP
Sbjct: 325 TATP 328



 Score = 32.3 bits (70), Expect = 2.3
 Identities = 25/102 (24%), Positives = 39/102 (38%)
 Frame = +2

Query: 539 SPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSXAPSAYLTPSS 718
           +PA +AT  ++  P+ H  T P     S+   T     F P + PP     P   +    
Sbjct: 321 TPARTATPVQTV-PQPHPQTLPPAVPHSVPQPTTAIPAFPPVMVPPFRVPLPGMPIPLPG 379

Query: 719 LGMAKXGSXPYFK*MMNXKLRALXSSSTHNPVPPQFTPHXKV 844
           + M +  S PY K +   K   L   +   P+ P   P   +
Sbjct: 380 VAMMQIVSCPYVKTVATTKTGVLPGMAP--PIVPMIHPQVAI 419


>AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongation
           regulator 1 variant protein.
          Length = 1081

 Score = 33.9 bits (74), Expect = 0.76
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = +2

Query: 536 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPG-----LKPPLSSXAPSA 700
           P+PA+S TST SS P   T TT   TS++    TP  ++  P        P +S   P+ 
Sbjct: 270 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAVSVATPTVSVSTPAP 328

Query: 701 YLTP 712
             TP
Sbjct: 329 TATP 332


>BC065530-1|AAH65530.1| 1003|Homo sapiens methyl-CpG binding domain
           protein 6 protein.
          Length = 1003

 Score = 33.5 bits (73), Expect = 1.0
 Identities = 28/99 (28%), Positives = 38/99 (38%)
 Frame = +2

Query: 533 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSXAPSAYLTP 712
           PP+P  S+ S  S  P FH      LT   + P         P  +PP+SS      L  
Sbjct: 245 PPAPHASS-SPPSDPPLFHCSDA--LTPPPLPPSNNLPAHPGPASQPPVSSATMHLPLVL 301

Query: 713 SSLGMAKXGSXPYFK*MMNXKLRALXSSSTHNPVPPQFT 829
             LG A     P     +   L +  + + H P+PP  T
Sbjct: 302 GPLGGAPTVEGPGAPPFLASSLLSAAAKAQHPPLPPPST 340


>AK056399-1|BAB71176.1| 1003|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31837 fis, clone NT2RP7000069, weakly similar to
           MUCIN 1 PRECURSOR. ).
          Length = 1003

 Score = 33.5 bits (73), Expect = 1.0
 Identities = 28/99 (28%), Positives = 38/99 (38%)
 Frame = +2

Query: 533 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSXAPSAYLTP 712
           PP+P  S+ S  S  P FH      LT   + P         P  +PP+SS      L  
Sbjct: 245 PPAPHASS-SPPSDPPLFHCSDA--LTPPPLPPSNNLPAHPGPASQPPVSSATMHLPLVL 301

Query: 713 SSLGMAKXGSXPYFK*MMNXKLRALXSSSTHNPVPPQFT 829
             LG A     P     +   L +  + + H P+PP  T
Sbjct: 302 GPLGGAPTVEGPGAPPFLASSLLSAAAKAQHPPLPPPST 340


>AB067474-1|BAB67780.1|  967|Homo sapiens KIAA1887 protein protein.
          Length = 967

 Score = 33.5 bits (73), Expect = 1.0
 Identities = 28/99 (28%), Positives = 38/99 (38%)
 Frame = +2

Query: 533 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSXAPSAYLTP 712
           PP+P  S+ S  S  P FH      LT   + P         P  +PP+SS      L  
Sbjct: 209 PPAPHASS-SPPSDPPLFHCSDA--LTPPPLPPSNNLPAHPGPASQPPVSSATMHLPLVL 265

Query: 713 SSLGMAKXGSXPYFK*MMNXKLRALXSSSTHNPVPPQFT 829
             LG A     P     +   L +  + + H P+PP  T
Sbjct: 266 GPLGGAPTVEGPGAPPFLASSLLSAAAKAQHPPLPPPST 304


>U91543-1|AAC39923.1| 2000|Homo sapiens zinc-finger helicase protein.
          Length = 2000

 Score = 32.3 bits (70), Expect = 2.3
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = +2

Query: 527  IKPPSPAISATSTRSSNPRFHTPTTPDLTS----ISINPLTPYXKEFAPGLKPPL 679
            + P   A S  S+R+S+P   +PTTP+ ++     +  P TP   E   G++ PL
Sbjct: 1517 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPL 1571


>BC110648-1|AAI10649.1|  661|Homo sapiens CHD3 protein protein.
          Length = 661

 Score = 32.3 bits (70), Expect = 2.3
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = +2

Query: 527 IKPPSPAISATSTRSSNPRFHTPTTPDLTS----ISINPLTPYXKEFAPGLKPPL 679
           + P   A S  S+R+S+P   +PTTP+ ++     +  P TP   E   G++ PL
Sbjct: 178 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPL 232


>AK127507-1|BAC87013.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45600 fis, clone BRTHA3020369. ).
          Length = 130

 Score = 32.3 bits (70), Expect = 2.3
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +3

Query: 465 SQCAGHPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPPQ 605
           S C G PF  S+    S P++S HP +   +H    Q P  + QPPQ
Sbjct: 85  SNCIG-PFS-SYLTSVSLPHSSIHPSIHPSIHPSFIQTPSGLSQPPQ 129


>AF006515-1|AAB87383.1| 1944|Homo sapiens CHD3 protein.
          Length = 1944

 Score = 32.3 bits (70), Expect = 2.3
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = +2

Query: 527  IKPPSPAISATSTRSSNPRFHTPTTPDLTS----ISINPLTPYXKEFAPGLKPPL 679
            + P   A S  S+R+S+P   +PTTP+ ++     +  P TP   E   G++ PL
Sbjct: 1517 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPL 1571


>X89894-1|CAA61984.1|  443|Homo sapiens nuclear receptor protein.
          Length = 443

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
           + +L  DL  TE  + + T  SLP++S+ ++GY   Y +    V     P +K+
Sbjct: 35  YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86


>S81243-1|AAB36006.1|  684|Homo sapiens CHN protein.
          Length = 684

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
           + +L  DL  TE  + + T  SLP++S+ ++GY   Y +    V     P +K+
Sbjct: 93  YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 144


>D78579-1|BAA11419.1|  626|Homo sapiens neuron derived orphan
           receptor protein.
          Length = 626

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
           + +L  DL  TE  + + T  SLP++S+ ++GY   Y +    V     P +K+
Sbjct: 35  YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86


>AL359710-3|CAI95139.1|  443|Homo sapiens nuclear receptor subfamily
           4, group A, member 3 protein.
          Length = 443

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
           + +L  DL  TE  + + T  SLP++S+ ++GY   Y +    V     P +K+
Sbjct: 35  YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86


>AL359710-2|CAI95138.1|  626|Homo sapiens nuclear receptor subfamily
           4, group A, member 3 protein.
          Length = 626

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
           + +L  DL  TE  + + T  SLP++S+ ++GY   Y +    V     P +K+
Sbjct: 35  YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86


>AL359710-1|CAM16648.1|  637|Homo sapiens nuclear receptor subfamily
           4, group A, member 3 protein.
          Length = 637

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
           + +L  DL  TE  + + T  SLP++S+ ++GY   Y +    V     P +K+
Sbjct: 46  YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97


>AL358937-4|CAI95320.1|  626|Homo sapiens nuclear receptor subfamily
           4, group A, member 3 protein.
          Length = 626

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
           + +L  DL  TE  + + T  SLP++S+ ++GY   Y +    V     P +K+
Sbjct: 35  YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86


>AL358937-3|CAM22558.1|  637|Homo sapiens nuclear receptor subfamily
           4, group A, member 3 protein.
          Length = 637

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
           + +L  DL  TE  + + T  SLP++S+ ++GY   Y +    V     P +K+
Sbjct: 46  YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97


>X86019-1|CAA60014.1|  494|Homo sapiens SH3-domain interacting
           protein protein.
          Length = 494

 Score = 30.7 bits (66), Expect = 7.1
 Identities = 28/98 (28%), Positives = 34/98 (34%), Gaps = 1/98 (1%)
 Frame = +2

Query: 530 KPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKE-FAPGLKPPLSSXAPSAYL 706
           KPP P       R S  R   P  P   +    P TP       P L+PP  S      L
Sbjct: 263 KPPPPP-PPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSAPHRPHLRPPPPSRPGPPPL 321

Query: 707 TPSSLGMAKXGSXPYFK*MMNXKLRALXSSSTHNPVPP 820
            PSS G  +    P     ++     L S     P+PP
Sbjct: 322 PPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPP 359


>AF031588-1|AAC03767.1|  503|Homo sapiens WASP interacting protein
           protein.
          Length = 503

 Score = 30.7 bits (66), Expect = 7.1
 Identities = 28/98 (28%), Positives = 34/98 (34%), Gaps = 1/98 (1%)
 Frame = +2

Query: 530 KPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKE-FAPGLKPPLSSXAPSAYL 706
           KPP P       R S  R   P  P   +    P TP       P L+PP  S      L
Sbjct: 263 KPPPPP-PPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSAPHRPHLRPPPPSRPGPPPL 321

Query: 707 TPSSLGMAKXGSXPYFK*MMNXKLRALXSSSTHNPVPP 820
            PSS G  +    P     ++     L S     P+PP
Sbjct: 322 PPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPP 359


>M94131-1|AAA59163.1| 1270|Homo sapiens mucin protein.
          Length = 1270

 Score = 30.3 bits (65), Expect = 9.4
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +2

Query: 533  PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSXAPSAYLTP 712
            PP+   S  +T + +P   T TTP  T+   +P+T         +  P  +  PS+ +T 
Sbjct: 1027 PPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITT 1086

Query: 713  SS 718
            ++
Sbjct: 1087 TT 1088



 Score = 30.3 bits (65), Expect = 9.4
 Identities = 28/102 (27%), Positives = 38/102 (37%), Gaps = 2/102 (1%)
 Frame = +2

Query: 533  PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLK--PPLSSXAPSAYL 706
            PP+   S+  T + +P   T TTP  T+   +P+T      +      PP +   PS   
Sbjct: 1051 PPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPPPTTMTTPSPTT 1110

Query: 707  TPSSLGMAKXGSXPYFK*MMNXKLRALXSSSTHNPVPPQFTP 832
            TPS          P    M         S  T  P+PP  TP
Sbjct: 1111 TPS----------PPTTTMTTLPPTTTSSPLTTTPLPPSITP 1142


>M74027-1|AAA59875.1|  573|Homo sapiens mucin protein.
          Length = 573

 Score = 30.3 bits (65), Expect = 9.4
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +2

Query: 533 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSXAPSAYLTP 712
           PP+   S  +T + +P   T TTP  T+   +P+T         +  P  +  PS+ +T 
Sbjct: 310 PPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITT 369

Query: 713 SS 718
           ++
Sbjct: 370 TT 371



 Score = 30.3 bits (65), Expect = 9.4
 Identities = 28/102 (27%), Positives = 38/102 (37%), Gaps = 2/102 (1%)
 Frame = +2

Query: 533 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLK--PPLSSXAPSAYL 706
           PP+   S+  T + +P   T TTP  T+   +P+T      +      PP +   PS   
Sbjct: 334 PPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPPPTTMTTPSPTT 393

Query: 707 TPSSLGMAKXGSXPYFK*MMNXKLRALXSSSTHNPVPPQFTP 832
           TPS          P    M         S  T  P+PP  TP
Sbjct: 394 TPS----------PPTTTMTTLPPTTTSSPLTTTPLPPSITP 425


>L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein.
          Length = 5179

 Score = 30.3 bits (65), Expect = 9.4
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +2

Query: 533  PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSXAPSAYLTP 712
            PP+   S  +T + +P   T TTP  T+   +P+T         +  P  +  PS+ +T 
Sbjct: 1652 PPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITT 1711

Query: 713  SS 718
            ++
Sbjct: 1712 TT 1713



 Score = 30.3 bits (65), Expect = 9.4
 Identities = 28/102 (27%), Positives = 38/102 (37%), Gaps = 2/102 (1%)
 Frame = +2

Query: 533  PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLK--PPLSSXAPSAYL 706
            PP+   S+  T + +P   T TTP  T+   +P+T      +      PP +   PS   
Sbjct: 1676 PPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPPPTTMTTPSPTT 1735

Query: 707  TPSSLGMAKXGSXPYFK*MMNXKLRALXSSSTHNPVPPQFTP 832
            TPS          P    M         S  T  P+PP  TP
Sbjct: 1736 TPS----------PPTTTMTTLPPTTTSSPLTTTPLPPSITP 1767


>BC117331-1|AAI17332.1|  346|Homo sapiens selenoprotein V protein.
          Length = 346

 Score = 30.3 bits (65), Expect = 9.4
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = +2

Query: 536 PSPAISATSTRSSNPRFHTPT-----TPDLTSISINPLTPYXKEFAPGLKPPLSSXAPS 697
           PS A ++TS R+S P   TPT     TP  T   I  LTP       G  P + + AP+
Sbjct: 10  PSSARTSTSVRASTPT-RTPTPLRTPTPVRTRTPIRTLTPVLTPSPAGTSPLVLTPAPA 67


>AY324825-1|AAP85542.1|  346|Homo sapiens selenoprotein V protein.
          Length = 346

 Score = 30.3 bits (65), Expect = 9.4
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = +2

Query: 536 PSPAISATSTRSSNPRFHTPT-----TPDLTSISINPLTPYXKEFAPGLKPPLSSXAPS 697
           PS A ++TS R+S P   TPT     TP  T   I  LTP       G  P + + AP+
Sbjct: 10  PSSARTSTSVRASTPT-RTPTPLRTPTPVRTRTPIRTLTPVLTPSPAGTSPLVLTPAPA 67


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,140,879
Number of Sequences: 237096
Number of extensions: 2456947
Number of successful extensions: 6392
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 5864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6370
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10928473528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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