Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_O05
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              23   3.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.8  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.8  

>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 38  IHCAWRGFFITDKLVDILCLSVIKCQ 115
           +HC  R  F++D+++      V  CQ
Sbjct: 20  VHCGTRPSFVSDEMIATAASVVNACQ 45


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 85  VHQLISDKESAPSTMDITQCSRIPXP 8
           +HQ IS K+ +P+T   ++CS I  P
Sbjct: 266 MHQ-ISKKKLSPATPKGSKCSMITTP 290


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/12 (50%), Positives = 12/12 (100%)
 Frame = +3

Query: 18  ILEHCVISIVLG 53
           ++E+C+++IVLG
Sbjct: 322 LMEYCLVNIVLG 333


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 261 LVPEVPVKRRLLNPQPFRQFACRQTVYADLVQQVQ 157
           LV +      +LN  P R  AC ++V A  +   Q
Sbjct: 301 LVDDCGCNSTMLNENPARVMACMRSVDAKTISVQQ 335


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 261 LVPEVPVKRRLLNPQPFRQFACRQTVYADLVQQVQ 157
           LV +      +LN  P R  AC ++V A  +   Q
Sbjct: 301 LVDDCGCNSTMLNENPARVMACMRSVDAKTISVQQ 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,066
Number of Sequences: 438
Number of extensions: 3466
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)