Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_O01
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    29   0.67 
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    28   1.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.7  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   2.7  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   3.6  
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    27   4.7  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    26   6.2  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   6.2  

>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 295 PLPEPLSHGGSRGLKSSMKQRLLPTRVVDGGVIGEERQ 182
           P   P+S G SRG  SS++Q++  +  ++ G + E  Q
Sbjct: 576 PTTRPVSRGLSRGTSSSLQQKVKASTPLNSGALNETVQ 613


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 284 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNN 400
           F+ W+    P+ S  +L ++G PP + LS  L   ++ N
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSELVAAKLKN 298


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 375 PSRLGASITPPPPFAQSRCSTSPYRGPRRSNI*ASPSTVG*HSAPTSRRYATVPPS 542
           P+   ++ TPPPP + S   TS    P  S    + +++      T+    TVPP+
Sbjct: 307 PTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPT 362


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 86  VTSQPESRKAPPSPRLLFSLYINDIPRSPETHLALFA 196
           + +QP+  K  PSP   F L+   + RS ET+L  +A
Sbjct: 47  IDTQPKEEKPEPSPSSPFGLFAYVVKRS-ETYLIQYA 82


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 514 DVGAECHPTVEGDA*IFDLRGPRYGLVEHRDWANG 410
           DV A C  +++     +DLR PR+ +    DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +2

Query: 5   GDSCSSYETTCRTVRSDIESRERVPGPVTSQPESRKAPPSPRLLFSLYIN 154
           G+    YE T R V+     ++     + ++PE    P  P  +++L+ N
Sbjct: 27  GEKSKEYEETPRKVKIVKRKKQPARKQIETRPEYEMEPEQPGQVYNLWYN 76


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +3

Query: 72  AFPAPSRHSRSPARLRPLPXYYSVCISTIYPGLRRPIWRSSPMTP-PSTTRVGRRRCFID 248
           + P PS    S +    L   +    S+ +   R+P  RS P+TP    TR      ++ 
Sbjct: 75  SLPTPSSDKSSTSPFPYLKGSFDDRFSSTHSLTRQPSPRS-PLTPLKGNTRASPEIRYVS 133

Query: 249 DFRPRLPPWD 278
           DF P   P++
Sbjct: 134 DFTPPSSPFE 143


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
 Frame = +2

Query: 161 PRSPETHLALFADDTAIYYSCRKKALLHRRL---QTAATTMGQWFRKWRIDINPTKSTAV 331
           P++ +   +LF+D++ +  S    +L          ++  +   F++ +       ST +
Sbjct: 326 PQTQQNESSLFSDNSMVNSSSNSFSLFPNATLPNPPSSELLTTPFQQIKPPSQVFMSTGL 385

Query: 332 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRP 421
           L K+ RP       PLP    + P+  VRP
Sbjct: 386 LSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,333,030
Number of Sequences: 5004
Number of extensions: 68601
Number of successful extensions: 233
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)