Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_N20
(882 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 58 8e-11
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 57 2e-10
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 56 3e-10
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 54 2e-09
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 53 3e-09
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 53 4e-09
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 53 4e-09
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 52 7e-09
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 52 9e-09
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 52 9e-09
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 51 1e-08
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 51 2e-08
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 51 2e-08
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 51 2e-08
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 50 3e-08
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 50 4e-08
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 50 4e-08
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 50 4e-08
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 49 5e-08
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 45 1e-06
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 44 2e-06
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 41 2e-05
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 40 4e-05
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 36 4e-04
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 33 0.005
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 33 0.005
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 33 0.005
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 28 0.13
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 25 0.92
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 6.5
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 22 8.6
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 58.4 bits (135), Expect = 8e-11
Identities = 47/162 (29%), Positives = 70/162 (43%), Gaps = 9/162 (5%)
Frame = +3
Query: 93 SLXAIASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA---NIRE 251
++ I SA C + D LL+ Y+R P S +VV L L L N+++
Sbjct: 5 TIILILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKD 64
Query: 252 SESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAAXTAGDYAL 428
T + L+ W D + W+ E+G T L V SE +W PD+VL N A G +
Sbjct: 65 QILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTM 122
Query: 429 -RARVSNNGSVSCIKRLDISTPISMXLDNWPNDMXTCTFKFG 551
+A + G V + + + +P D TC KFG
Sbjct: 123 TKAILHYTGKVLWTPPAIFKSSCEIDVRYFPFDQQTCFMKFG 164
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 57.2 bits (132), Expect = 2e-10
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 7/148 (4%)
Frame = +3
Query: 129 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 296
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 297 IDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN---AAAXTAGDYALRARVSNNGSVSCI 467
+D+RL++ G+ + + R+W+PD N + T R+ +G V
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYNGKHSYLHTITSPNKFVRLYQDGRVLYS 121
Query: 468 KRLDISTPISMXLDNWPNDMXTCTFKFG 551
RL I M L+N+P D C +FG
Sbjct: 122 SRLTIKAGCPMNLENFPMDTQRCPLQFG 149
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 56.4 bits (130), Expect = 3e-10
Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 8/166 (4%)
Frame = +3
Query: 126 ENATSLSLMIDSLLATYDRESPPDS--KIVVNLTLHL--RHANIRESESTVRILADLQMN 293
++ T+L + L YD P S +I N+T+ L + + S + + + + +
Sbjct: 39 DHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLMEFDDWTSVMELHSWMTLM 98
Query: 294 WIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAAAXT---AGDYALRARVSNNGSVS 461
W D LSW ++ G + V S+ +W PD+ + N+ T G V ++GSVS
Sbjct: 99 WTDSHLSWKPSDFDGINYIYVKSDDIWVPDISVYNSGDMTFDQTGIPPTTCLVFSSGSVS 158
Query: 462 CIKRLDISTPISMXLDNWPNDMXTCTFKFGXRMPNTDEMXXVIDXR 599
C+ + + +WP D C FG + + +E+ +D +
Sbjct: 159 CVPSVKHVAKCATDFSSWPYDTHRCRINFGSWVHSGEEVNIFLDKK 204
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 54.0 bits (124), Expect = 2e-09
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 8/147 (5%)
Frame = +3
Query: 123 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 287
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 288 MNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL--LNAAAXTAGDYALRARVSNNGSV 458
+ W L+W + E+ ++ V S +W PD+V+ + + ++ V N+G++
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVMHSVTSVGIDLEMPSVECIVFNSGTI 147
Query: 459 SCIKRLDISTPISMXLDNWPNDMXTCT 539
C+ + WP D+ CT
Sbjct: 148 LCVPFTTYTPVCEYDHTWWPYDILNCT 174
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 53.2 bits (122), Expect = 3e-09
Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 9/152 (5%)
Frame = +3
Query: 123 CENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLR-------HANIRESESTVRILAD 281
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 282 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLL-NAAAXTAGDYALRARVSNNGS 455
++ +W D +L W+ E+G L V S+ +WRPD+VL NA A +A ++ G
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 136
Query: 456 VSCIKRLDISTPISMXLDNWPNDMXTCTFKFG 551
V + + ++ +P D TC KFG
Sbjct: 137 VEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFG 168
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 52.8 bits (121), Expect = 4e-09
Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Frame = +3
Query: 150 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 314
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 315 WNAGEW-GCSTWLVSSERLWRPDVVLLNAA-AXTAGDYALRARVSNNGSVSCIKRLDIST 488
WN E+ G ++ +LW+PD+++ N+A G Y V++NGS + +
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIFKS 177
Query: 489 PISMXLDNWPNDMXTCTFKFG 551
+ + +P D C KFG
Sbjct: 178 TCKIDITWFPFDDQHCDMKFG 198
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 52.8 bits (121), Expect = 4e-09
Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Frame = +3
Query: 150 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 314
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 315 WNAGEW-GCSTWLVSSERLWRPDVVLLNAA-AXTAGDYALRARVSNNGSVSCIKRLDIST 488
WN E+ G ++ +LW+PD+++ N+A G Y V++NGS + +
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIFKS 177
Query: 489 PISMXLDNWPNDMXTCTFKFG 551
+ + +P D C KFG
Sbjct: 178 TCKIDITWFPFDDQHCDMKFG 198
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 52.0 bits (119), Expect = 7e-09
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = +3
Query: 240 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-AXTA 413
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 414 GDYALRARVSNNGSVSCIKRLDISTPISMXLDNWPNDMXTCTFKFG 551
G Y V++NGS + + + + +P D C KFG
Sbjct: 85 GTYQTSVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFG 130
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 51.6 bits (118), Expect = 9e-09
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Frame = +3
Query: 201 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWR 374
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 375 PDVVLLNAAAXTAGDYALRAR----VSNNGSVSCIKRLDISTPISMXLDNWPNDMXTCTF 542
PD+VL N A G+Y +R + + NG V + + ++ + +P D TC
Sbjct: 111 PDIVLFNNAD---GNYEVRYKSNVLIYPNGDVLWVPPAIYQSSCTIDVTYFPFDQQTCIM 167
Query: 543 KFGXRMPNTDEM 578
KFG N D++
Sbjct: 168 KFGSWTFNGDQV 179
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 51.6 bits (118), Expect = 9e-09
Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Frame = +3
Query: 150 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 314
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 315 WNAGEWGCSTWL-VSSERLWRPDVVLL-NAAAXTAGDYALRARVSNNGSVSCIKRLDIST 488
W E+G L V S+ +WRPD+VL NA A +A + + G V +
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEWKPPAIYKS 151
Query: 489 PISMXLDNWPNDMXTCTFKFG 551
+ ++ +P D TC KFG
Sbjct: 152 SCEIDVEYFPFDEQTCVLKFG 172
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 51.2 bits (117), Expect = 1e-08
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = +3
Query: 240 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-AXTA 413
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 414 GDYALRARVSNNGSVSCIKRLDISTPISMXLDNWPNDMXTCTFKFG 551
G Y V+++GS + + M + +P D C KFG
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFDDQHCDMKFG 130
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 50.8 bits (116), Expect = 2e-08
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = +3
Query: 240 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-AXTA 413
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 414 GDYALRARVSNNGSVSCIKRLDISTPISMXLDNWPNDMXTCTFKFG 551
G Y V+++GS + + M + +P D C KFG
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPFDDQHCDMKFG 130
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 50.8 bits (116), Expect = 2e-08
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 9/165 (5%)
Frame = +3
Query: 84 RFSSLXAIASAAE--CENATSLSLMIDSLLATYD-RESPPDSK---IVVNLTLHLRHA-N 242
R++ + AIA AA + +++ LL TY+ E P ++ +V++ L L +
Sbjct: 3 RWTLMAAIALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIID 62
Query: 243 IRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-AXTAG 416
+ E + L++ W D + WN ++G L + RLW+PDV++ N+A G
Sbjct: 63 VDEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDG 122
Query: 417 DYALRARVSNNGSVSCIKRLDISTPISMXLDNWPNDMXTCTFKFG 551
Y V NNG+ + + + + +P D C KFG
Sbjct: 123 TYPTNVVVKNNGTCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFG 167
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 50.8 bits (116), Expect = 2e-08
Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 10/144 (6%)
Frame = +3
Query: 150 MIDSLLATYDRESPPDSKIVVNLT--LHLRHANIRESESTVRILAD---LQMNWIDKRLS 314
+ D LL+ Y+R P LT L L+ + + E +++ ++ W D +L
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLK 96
Query: 315 WNAGEWGCSTWL-VSSERLWRPDVVLLNAAAXTAGDYAL----RARVSNNGSVSCIKRLD 479
WN E+G L V SE +W PD+VL N A G+Y + +A + G VS
Sbjct: 97 WNPEEYGGVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKYTGDVSWKPPAI 153
Query: 480 ISTPISMXLDNWPNDMXTCTFKFG 551
+ + ++ +P D +C KFG
Sbjct: 154 YKSSCEINVEYFPFDEQSCIMKFG 177
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 50.0 bits (114), Expect = 3e-08
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = +3
Query: 240 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-AXTA 413
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 414 GDYALRARVSNNGSVSCIKRLDISTPISMXLDNWPNDMXTCTFKFG 551
G Y V+++GS + + + + +P D C KFG
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFG 130
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 49.6 bits (113), Expect = 4e-08
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = +3
Query: 240 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-AXTA 413
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 414 GDYALRARVSNNGSVSCIKRLDISTPISMXLDNWPNDMXTCTFKFG 551
G Y V+++GS + + + + +P D C KFG
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKIDIAWFPFDDQHCDMKFG 130
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 49.6 bits (113), Expect = 4e-08
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = +3
Query: 240 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-AXTA 413
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 414 GDYALRARVSNNGSVSCIKRLDISTPISMXLDNWPNDMXTCTFKFG 551
G Y V+++GS + + + + +P D C KFG
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFDDQHCDMKFG 130
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 49.6 bits (113), Expect = 4e-08
Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 10/144 (6%)
Frame = +3
Query: 150 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 314
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 315 WNAGEWGCSTWL-VSSERLWRPDVVLLNAAAXTAGDYAL----RARVSNNGSVSCIKRLD 479
W E+G L V S+ +WRPD+VL N A G+Y + +A V +G V
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA---DGNYEVTLMTKATVYYSGLVVWQPPAV 148
Query: 480 ISTPISMXLDNWPNDMXTCTFKFG 551
+ S+ ++ +P D+ TC K G
Sbjct: 149 YKSSCSIDVEFFPYDVQTCVLKLG 172
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 49.2 bits (112), Expect = 5e-08
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 12/146 (8%)
Frame = +3
Query: 150 MIDSLLATYDRESPP----DSKIVVNLTLHLRH---ANIRESESTVRILADLQMNWIDKR 308
+ D LL+ Y+R P ++ V + L L N++ T + ++ W D +
Sbjct: 24 LYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYK 81
Query: 309 LSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAAXTAGDYAL----RARVSNNGSVSCIKR 473
L WN ++G T V SE +W PD+VL N A G+Y + +A + + G V
Sbjct: 82 LKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA---DGNYEVTIMTKAILHHTGKVVWKPP 138
Query: 474 LDISTPISMXLDNWPNDMXTCTFKFG 551
+ + ++ +P D TC KFG
Sbjct: 139 AIYKSFCEIDVEYFPFDEQTCFMKFG 164
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 44.8 bits (101), Expect = 1e-06
Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 8/146 (5%)
Frame = +3
Query: 138 SLSLMIDSLLATYDRESPPD----SKIVVNLTLHLRHAN-IRESESTVRILADLQMNWID 302
++++++++LL Y+ P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 303 KRLSWNAGEWGCSTWLVSSERLWRPDVVLLNAAAXTAGDYAL---RARVSNNGSVSCIKR 473
RLS+ S + ER+WRPD N + R+S +G + R
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMR 155
Query: 474 LDISTPISMXLDNWPNDMXTCTFKFG 551
L I M L N+P D +C G
Sbjct: 156 LTIKAKCPMELRNFPMDRQSCPLILG 181
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 43.6 bits (98), Expect = 2e-06
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 3/118 (2%)
Frame = +3
Query: 204 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 380
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 381 VVLLNAAAXTAGDYALRAR--VSNNGSVSCIKRLDISTPISMXLDNWPNDMXTCTFKF 548
+L N A + VS+ G V + + + ++ +P D C K+
Sbjct: 92 TILYNNADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDIDVEFFPFDEQRCVLKW 149
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 40.7 bits (91), Expect = 2e-05
Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 13/149 (8%)
Frame = +3
Query: 129 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 296
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 297 IDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNA------AAXTAGDYALRARVSNN 449
D RL++ G T V SE +W PD +N A T+ ++ R+ ++
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEF---IRIHHS 123
Query: 450 GSVSCIKRLDISTPISMXLDNWPNDMXTC 536
GS++ RL I+ M L +P D C
Sbjct: 124 GSITRSIRLTITASCPMNLQYFPMDRQLC 152
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 39.5 bits (88), Expect = 4e-05
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Frame = +3
Query: 129 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 296
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 297 IDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNA------AAXTAGDYALRARVSNN 449
D RL++ G T V SE +W PD +N A T+ ++ R+ ++
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEF---IRIHHS 123
Query: 450 GSVSCIKRLDISTPISMXLDNWPNDMXTC 536
GS++ RL I+ M L +P D C
Sbjct: 124 GSITRSIRLTITASCPMNLQYFPMDRQLC 152
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 36.3 bits (80), Expect = 4e-04
Identities = 40/158 (25%), Positives = 63/158 (39%), Gaps = 7/158 (4%)
Frame = +3
Query: 87 FSSLXAIASAAECENATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRES 254
++SL + EN T I +L YD P+ ++V + L + + I E
Sbjct: 22 WASLENTGISDRLENVTQT---ISRILDGYDIRLRPNFGGEPLLVGMDLTIASFDAISEV 78
Query: 255 ESTVRILADLQMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLNAAAXTAGDYALR- 431
I L W D+RL+++ E + +E++W PD N D R
Sbjct: 79 NMDYTITMYLNQYWKDERLAFSQEEEVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERN 138
Query: 432 --ARVSNNGSVSCIKRLDISTPISMXLDNWPNDMXTCT 539
R+S +GSV+ R + M L +P D CT
Sbjct: 139 KLVRLSGDGSVTYGMRFTTTLACMMDLHYYPLDSQNCT 176
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 32.7 bits (71), Expect = 0.005
Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 8/147 (5%)
Frame = +3
Query: 126 ENATSLSLMIDSLLAT--YDRE--SPPDSKIVVNLT-LHLRHANIRESESTVRILADLQM 290
E+ S ++D+LL + YD+ P + VN++ L L A+ ES + LQ
Sbjct: 56 EDGKSDKEILDNLLLSTRYDKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQ 115
Query: 291 NWIDKRLSW-NAGEWGCSTWLVSSERLWRPDV--VLLNAAAXTAGDYALRARVSNNGSVS 461
W D RL + N ++ + + +W PD ++ R+ NG+V+
Sbjct: 116 QWYDPRLRYSNRSQYEFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVN 175
Query: 462 CIKRLDISTPISMXLDNWPNDMXTCTF 542
+ R + L+ +P D C+F
Sbjct: 176 YLMRRHLILSCQGRLNIFPFDDPLCSF 202
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 32.7 bits (71), Expect = 0.005
Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 8/147 (5%)
Frame = +3
Query: 126 ENATSLSLMIDSLLAT--YDRE--SPPDSKIVVNLT-LHLRHANIRESESTVRILADLQM 290
E+ S ++D+LL + YD+ P + VN++ L L A+ ES + LQ
Sbjct: 56 EDGKSDKEILDNLLLSTRYDKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQ 115
Query: 291 NWIDKRLSW-NAGEWGCSTWLVSSERLWRPDV--VLLNAAAXTAGDYALRARVSNNGSVS 461
W D RL + N ++ + + +W PD ++ R+ NG+V+
Sbjct: 116 QWYDPRLRYSNRSQYEFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVN 175
Query: 462 CIKRLDISTPISMXLDNWPNDMXTCTF 542
+ R + L+ +P D C+F
Sbjct: 176 YLMRRHLILSCQGRLNIFPFDDPLCSF 202
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 32.7 bits (71), Expect = 0.005
Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 8/147 (5%)
Frame = +3
Query: 126 ENATSLSLMIDSLLAT--YDRE--SPPDSKIVVNLT-LHLRHANIRESESTVRILADLQM 290
E+ S ++D+LL + YD+ P + VN++ L L A+ ES + LQ
Sbjct: 56 EDGKSDKEILDNLLLSTRYDKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQ 115
Query: 291 NWIDKRLSW-NAGEWGCSTWLVSSERLWRPDV--VLLNAAAXTAGDYALRARVSNNGSVS 461
W D RL + N ++ + + +W PD ++ R+ NG+V+
Sbjct: 116 QWYDPRLRYSNRSQYEFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVN 175
Query: 462 CIKRLDISTPISMXLDNWPNDMXTCTF 542
+ R + L+ +P D C+F
Sbjct: 176 YLMRRHLILSCQGRLNIFPFDDPLCSF 202
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 27.9 bits (59), Expect = 0.13
Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 4/117 (3%)
Frame = +3
Query: 204 IVVNLT-LHLRHANIRESESTVRILADLQMNWIDKRLSW-NAGEWGCSTWLVSSERLWRP 377
+ VN++ L L A+ ES + LQ W D RL + N ++ + + +W P
Sbjct: 137 LTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQYEFLNAIHHYDDIWLP 196
Query: 378 DV--VLLNAAAXTAGDYALRARVSNNGSVSCIKRLDISTPISMXLDNWPNDMXTCTF 542
D ++ R+ NG+V+ + R + L+ +P D C+F
Sbjct: 197 DTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSF 253
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 25.0 bits (52), Expect = 0.92
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Frame = +3
Query: 360 ERLWRPDVVLLNAAAXTAGDYALRAR---VSNNGSVSCIKRLDISTPISMXLDNWPNDMX 530
+ +WRPD NA + T + + + ++ + +L + +M +P+D
Sbjct: 116 KNMWRPDSFFKNAKSVTFQTMTIPNHYLWLYKDKTILYMVKLTLKLSCAMNFLIYPHDTQ 175
Query: 531 TCTFKFGXRMPNTDEM 578
C + TDEM
Sbjct: 176 ECKLQMESLSHTTDEM 191
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.2 bits (45), Expect = 6.5
Identities = 12/47 (25%), Positives = 15/47 (31%)
Frame = +3
Query: 657 GGDPAPVAXVXXPXXNXPXXXXRXXPPXGXPXXAGAXXPRGXPXXPA 797
G P+P P P + PP G P + P PA
Sbjct: 22 GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPA 68
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2
Query: 347 PSAAAPFPCVPTQS 306
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 21.8 bits (44), Expect = 8.6
Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 11/122 (9%)
Frame = +3
Query: 204 IVVNLTLHLRHAN-IRESESTVRILADLQMNWIDKRLS-----WNAGEWGCSTWLVSSER 365
++V+ + + N I + R+ ++ +WI+ RL + G+ + +
Sbjct: 11 VLVDFNIFVADINSINVEDMDFRVDMFVRQSWIESRLDMPDYIFEEGDDYVTLPPEFFDS 70
Query: 366 LWRPDVVLLNAAAXTAGDYALRARVSN-----NGSVSCIKRLDISTPISMXLDNWPNDMX 530
LW+PD LNA AL + S+ N +V R+ M +P D+
Sbjct: 71 LWQPDPYFLNAKVSEIA--ALNHKFSSVTLYRNKTVKYSARMHAIIACQMEFQLYPMDIQ 128
Query: 531 TC 536
C
Sbjct: 129 IC 130
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,939
Number of Sequences: 438
Number of extensions: 4827
Number of successful extensions: 65
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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