Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_N02
         (863 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1113 - 24068441-24068923                                         35   0.096
10_08_0309 + 16666047-16666543,16666626-16666836,16666925-166670...    32   0.68 
01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036           31   1.2  
09_04_0164 + 15265878-15268701,15268782-15269200                       30   2.7  
07_03_1769 + 29377784-29377878,29377993-29378180,29378340-293784...    29   6.3  
05_04_0173 + 18724367-18724476,18724570-18724651,18724750-187248...    29   6.3  
01_03_0175 + 13450869-13451013,13451293-13451372,13451417-134522...    29   6.3  
01_01_0920 + 7264498-7264573,7264705-7264745,7265339-7265408,726...    29   6.3  

>07_03_1113 - 24068441-24068923
          Length = 160

 Score = 34.7 bits (76), Expect = 0.096
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 683 WXWGCPLTRHGSTTPV-ADVVHVGAIGDHDARLQREQL 573
           W WGC  + HG  +   A  VH G I   DA  QR+ +
Sbjct: 68  WRWGCGGSPHGEESEAPAAAVHAGRISSEDAAAQRQNI 105


>10_08_0309 +
           16666047-16666543,16666626-16666836,16666925-16667035,
           16667130-16667918
          Length = 535

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 534 YNTDSATELSERAKLFPLKPRIVVSYSTYVDNIGNRGGAPVPR 662
           YN D   EL E A+   LK + V+S+     N+G+    P+PR
Sbjct: 129 YNFDGYVELMEMARKTGLKVQAVMSFHQCGGNVGDSVNIPLPR 171


>01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036
          Length = 1011

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
 Frame = +3

Query: 534  YNTDSATELSERAKLFPLKPRIVVSYSTYVDNIGNRGGAPVPRQGTXPXPXSP--GFNGQ 707
            Y +    EL  R KLFP   +++V     +D +  +GGAP   + T      P  G +G 
Sbjct: 900  YQSYMGRELHFREKLFPRLKQLIVDNMPNLDELSFQGGAPELERLTLAVLKEPADGISG- 958

Query: 708  NVPIEKNPRMXGASLGRXGHIL 773
               I+K PR+        GH++
Sbjct: 959  ---IDKLPRLKEVEF--FGHVI 975


>09_04_0164 + 15265878-15268701,15268782-15269200
          Length = 1080

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 351 WFKNDSPVYEYDVESNELIDSSPTSI 428
           W  N + +Y  DVE+N L D  PTSI
Sbjct: 307 WLANCTILYLLDVENNSLADDLPTSI 332


>07_03_1769 +
           29377784-29377878,29377993-29378180,29378340-29378472,
           29378580-29378715,29378996-29379072,29379162-29380830,
           29380935-29381018,29381120-29381224,29381302-29381358
          Length = 847

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 327 GSPAPSVHWFKNDSPVYEYDVESNELIDSSPTSIARISSTLIVTRTTSQD 476
           GSP P +H F+N++   E ++ SN   +SS      I ++   T + S++
Sbjct: 233 GSPMPQMHNFQNETSSSELNISSNCSPESSIKVTQDIGASTTGTDSVSEE 282


>05_04_0173 +
           18724367-18724476,18724570-18724651,18724750-18724840,
           18725060-18725172,18725270-18725342,18725445-18725565,
           18725665-18725782,18726609-18726748,18726824-18726881,
           18727007-18727077,18727181-18727733
          Length = 509

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 633 GNRGGAPVPRQGTXPXPXSPG 695
           G+ G AP P+QG  P P  PG
Sbjct: 432 GSYGNAPYPQQGRGPPPPYPG 452


>01_03_0175 +
           13450869-13451013,13451293-13451372,13451417-13452240,
           13452287-13452638
          Length = 466

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +1

Query: 544 IALLSSRNA---LSCSR*SLASWSPIAPTWTTSATGVVLPCRVKGXPQXQXXLXST 702
           +A+LSSR A   LS S  S A   P  P W++SA   +LP      P  Q    +T
Sbjct: 186 VAVLSSRTAVSPLSSSSSSPAHRHPRRPHWSSSAAQGLLPLLRASPPHLQVATVAT 241


>01_01_0920 +
           7264498-7264573,7264705-7264745,7265339-7265408,
           7265500-7265648,7266143-7266238,7266326-7266396,
           7266510-7266571,7266651-7266714,7267608-7267692,
           7267777-7267903,7268016-7268080,7268739-7268796,
           7268927-7269066,7269624-7269693,7269910-7269981,
           7270188-7270234,7270468-7270566
          Length = 463

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +3

Query: 252 SITQGPLPSYAHTPGTTIELTC--EAAGSPAPSVHWFKNDSPVYE 380
           S  +GP P+  HT   T ++T     A S  P   W K+   +YE
Sbjct: 353 STERGPHPNIQHTENITQDMTARKHLAASVLPGAEWRKDGHLLYE 397


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,917,381
Number of Sequences: 37544
Number of extensions: 427036
Number of successful extensions: 1157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)