Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_N01
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    28   2.0  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   2.7  
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    27   3.5  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    27   4.7  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    26   6.1  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 796 EAARHLIGTPDVWKQPAQKSRP-SPSVEGPXFAKVSAEVPPTIQ 668
           +AA+  + TP V + PA    P +PSV  P  A V+ EVP   Q
Sbjct: 503 KAAQPSVITPSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQ 546



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
 Frame = -2

Query: 769 PDVWKQPAQKSRP-SPSVEGPXFAKVSAEVP-----PTIQFEAEVPKTGHPDPDADASDH 608
           P V + P     P +PSV  P  A V+ EVP     P +    E P    P P A     
Sbjct: 587 PSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSV--PQPPAAPVVP 644

Query: 607 EVGTQRRRSSRPV 569
           EV +  +R + PV
Sbjct: 645 EVPSVPQRPAVPV 657


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
 Frame = -2

Query: 760 WKQPAQKS--RPS---PSVEGPXFAKVSAEVPPTIQFEAEVP 650
           W+QP Q+S  +PS   PS   P     SA +PPT      VP
Sbjct: 463 WQQPTQQSAVQPSNLVPSQNAPFIPGTSAPLPPTTFAPPGVP 504


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 474 PPQFLTNLIRFGGGSCH*PW*RVEPPETPHNEVRDG 367
           PP F+T++ + G  S H     V      HNEV DG
Sbjct: 237 PPNFVTSINKAGSSSDHGGELHVTYCPVDHNEVSDG 272


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -2

Query: 688 EVPPTIQFEAEVPKTGHPDPDADASDHEVGTQRRRSSRPVKQQGLGF 548
           E+P   Q E E   T  PD  ADA + E+ T+ +R  R V +  + F
Sbjct: 550 EIPNETQTEDEQDGTNTPDNRADAEEREL-TRSQRIYRTVVRTIVAF 595


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
 Frame = +2

Query: 395 SGGSTRHHGQWQEP----PPNLIRFVRNCGGPGNSSAGSAVVTRIRRLGLEVALDKTQAL 562
           S   +R  GQ  EP    PP  I+   +  G GN SA    ++        VAL+ T  +
Sbjct: 68  SEAKSREFGQRSEPSPPPPPEGIKIKISTKGAGNPSAKKLKISTEETSDTNVALNNTSEI 127

Query: 563 LFHGPGRAPPLGA 601
                  + P  A
Sbjct: 128 SHKSSNNSQPKDA 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,597,474
Number of Sequences: 5004
Number of extensions: 73903
Number of successful extensions: 232
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)