Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_M15
(903 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 31 0.019
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.044
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.044
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.058
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 29 0.077
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 28 0.13
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.18
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.18
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 27 0.18
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.23
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.23
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.23
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.23
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.23
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 27 0.23
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 26 0.41
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 25 0.71
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 24 1.6
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 6.7
DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. 22 8.8
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 30.7 bits (66), Expect = 0.019
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 341 VSSERLWRPDVVLLNAA-ATTXGDYALRARVSNNGS 445
+ RLW+PDV++ N+A G Y V NNG+
Sbjct: 100 IPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGT 135
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 29.5 bits (63), Expect = 0.044
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 341 VSSERLWRPDVVLLNAA-ATTXGDYALRARVSNNGS 445
++ +LW+PD+++ N+A G Y V++NGS
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 29.5 bits (63), Expect = 0.044
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 341 VSSERLWRPDVVLLNAA-ATTXGDYALRARVSNNGS 445
++ +LW+PD+++ N+A G Y V++NGS
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 29.1 bits (62), Expect = 0.058
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 341 VSSERLWRPDVVLLNAA-ATTXGDYALRARVSNNGS 445
++ +LW+PD+++ N+A G Y V++NGS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGS 98
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 28.7 bits (61), Expect = 0.077
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = +1
Query: 112 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 276
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 277 MNXIDKRLSWNA 312
+ L+W +
Sbjct: 88 LMWEQSHLTWKS 99
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 27.9 bits (59), Expect = 0.13
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 323 GCSTWLVSSERLWRPDVVLLNAA 391
G T V SE +W PD+VL N A
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYNNA 113
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.5 bits (58), Expect = 0.18
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 341 VSSERLWRPDVVLLNAA 391
V S+ +WRPD+VL N A
Sbjct: 105 VPSDHIWRPDIVLYNNA 121
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.5 bits (58), Expect = 0.18
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 341 VSSERLWRPDVVLLNAA 391
V S+ +WRPD+VL N A
Sbjct: 105 VPSDHIWRPDIVLYNNA 121
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 27.5 bits (58), Expect = 0.18
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 341 VSSERLWRPDVVLLNAA 391
V S+ +WRPD+VL N A
Sbjct: 101 VPSDHIWRPDIVLYNNA 117
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.23
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 341 VSSERLWRPDVVLLNAA-ATTXGDYALRARVSNNGS 445
++ +LW+PD+++ N+A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.23
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 341 VSSERLWRPDVVLLNAA-ATTXGDYALRARVSNNGS 445
++ +LW+PD+++ N+A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.23
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 341 VSSERLWRPDVVLLNAA-ATTXGDYALRARVSNNGS 445
++ +LW+PD+++ N+A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.23
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 341 VSSERLWRPDVVLLNAA-ATTXGDYALRARVSNNGS 445
++ +LW+PD+++ N+A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.23
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 341 VSSERLWRPDVVLLNAA-ATTXGDYALRARVSNNGS 445
++ +LW+PD+++ N+A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 27.1 bits (57), Expect = 0.23
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 317 EWGCSTWL-VSSERLWRPDVVLLNAA 391
E+G T L V SE +W PD+VL N A
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVLYNNA 113
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 26.2 bits (55), Expect = 0.41
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 323 GCSTWLVSSERLWRPDVVLLNAA 391
G V SE +W PD+VL N A
Sbjct: 104 GVEMLYVPSENIWLPDIVLYNNA 126
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 25.4 bits (53), Expect = 0.71
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 350 ERLWRPDVVLLNAAATTXGDYALR 421
+++W+PD+VL N A G+Y +R
Sbjct: 106 DKVWKPDIVLFNNA---DGNYEVR 126
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 341 VSSERLWRPDVVLLNAA 391
V R+WRPD +L N A
Sbjct: 82 VPYNRVWRPDTILYNNA 98
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 22.2 bits (45), Expect = 6.7
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +2
Query: 350 ERLWRPDVVLLN 385
ER+WRPD N
Sbjct: 115 ERIWRPDTYFYN 126
>DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein.
Length = 471
Score = 21.8 bits (44), Expect = 8.8
Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +1
Query: 172 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNXIDKRLSWNAGGMGLQHLAGVL- 348
E + ++N L + + + ++ + D + N + + S AGG+ + AG++
Sbjct: 233 EGDDQQRAIINTLLSISASCVIAFATSALVSKDSKFNMVHIQNSTLAGGVAIGTAAGMMC 292
Query: 349 ---GTLV 360
GTL+
Sbjct: 293 QPVGTLI 299
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,966
Number of Sequences: 438
Number of extensions: 3703
Number of successful extensions: 30
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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