Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_M13
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 287 1e-78
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 287 1e-78
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 26 6.1
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 26 6.1
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 8.1
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 26 8.1
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 8.1
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 26 8.1
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 287 bits (705), Expect = 1e-78
Identities = 130/224 (58%), Positives = 168/224 (75%)
Frame = +2
Query: 56 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDR 235
H KF PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DR
Sbjct: 3 HCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDR 62
Query: 236 PGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRHFYKNW 415
PGSK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +R FYKNW
Sbjct: 63 PGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNW 122
Query: 416 YXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIME 595
+ + + +SI ++ +++ +YCSVVRV+AHTQ++ QKKAH+ME
Sbjct: 123 FKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLME 180
Query: 596 IQLNGGTIEDKVKWAXXHLEKPIPVDSVFAQMK*LTALVSPRAK 727
IQ+NGG++ DKV+WA H EK + + S F Q + + + R K
Sbjct: 181 IQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 688 DEMIDCIXXXXXXXXXXXXSRWHTXXLPRKTTRVL 792
+EMID I +RW T LPRKT R L
Sbjct: 212 NEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGL 246
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 287 bits (704), Expect = 1e-78
Identities = 129/224 (57%), Positives = 168/224 (75%)
Frame = +2
Query: 56 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDR 235
H KF PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DR
Sbjct: 3 HCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDR 62
Query: 236 PGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRHFYKNW 415
PGSK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +R FYKNW
Sbjct: 63 PGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNW 122
Query: 416 YXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIME 595
+ + + +SI ++ +++ +YCSVVRV+AHTQ++ QKKAH+ME
Sbjct: 123 FKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLME 180
Query: 596 IQLNGGTIEDKVKWAXXHLEKPIPVDSVFAQMK*LTALVSPRAK 727
IQ+NGG++ DKV+WA H EK + + S F Q + + + R K
Sbjct: 181 IQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 688 DEMIDCIXXXXXXXXXXXXSRWHTXXLPRKTTRVL 792
+EMID I +RW T LPRKT R L
Sbjct: 212 NEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGL 246
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 518 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 628
C+VV + T M+ QRQ K I + LNG +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 26.2 bits (55), Expect = 6.1
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +3
Query: 324 TLRPLMDYALC*LSGRSICLKTVDVTSTKTGTNARRRLSLKPVRNGRMSLD 476
TL DYA+ S +S+ LK V+ T T RRR + RN + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/45 (24%), Positives = 20/45 (44%)
Frame = -1
Query: 732 VSFALGDTNAVNHFIWANTESTGIGFSRCXXAHFTLSSMVPPLSW 598
+ F + T ++F W T + G + AH ++S + P W
Sbjct: 747 IYFCVVYTGGSSNFSWWGTTVSSAGCDKKGCAHLSVSDISKPSGW 791
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +2
Query: 632 KWAXXHLEKPIPVDSVFAQMK*LTALV---SPRAKDTKVSLL 748
KW ++ K +PVD A M TAL S AKD +SLL
Sbjct: 3 KWTKENVLKILPVDDESAAMITSTALAVDSSEAAKDYWISLL 44
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 481 FASKLILPFLTGFSESLLLAFVPVFVEVTST 389
F SKL L + F E + LAF+ F+E TS+
Sbjct: 1032 FFSKLTLQQVQEFYEVVPLAFINCFLEFTSS 1062
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -3
Query: 226 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESHRPMTGC*KF 62
F N VG G+I D S + +R+VF D +G L ++SH T F
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTF 398
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,477,696
Number of Sequences: 5004
Number of extensions: 69569
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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