Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_M09
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   1.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.3  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   8.3  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   8.3  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = -2

Query: 506 CPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAG-VLNGDERFRHVTTLH 330
           C  +P   S+ + L+   +  +  +   Q NSP  +   P H+G   +     R  ++++
Sbjct: 30  CTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAARTTSSMY 89

Query: 329 AWNETPCARRYYRPRTASA 273
            +     A  +++ + A A
Sbjct: 90  PYVSAAAAHHHHQQQQAVA 108


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 721 SNAWRICFAMIGRADIEGSK 662
           S  WR+C A+  R + E S+
Sbjct: 101 SGLWRVCVAISSRMEYECSR 120


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 224 SSLKNHYFHCFITYSVGRK 280
           SS    +FHC+     GRK
Sbjct: 420 SSFFQQFFHCYCPVRFGRK 438


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 203 VGDRFARSSLKNHYFHCFI 259
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 203 VGDRFARSSLKNHYFHCFI 259
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,724
Number of Sequences: 438
Number of extensions: 4794
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)