Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_L21
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   3.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   4.4  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.8  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    23   9.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
 Frame = -1

Query: 589 PPPPPXXX--GXGXXXXXXXXXXXKRGGAPPPPXXXXXKKGXPPXPP 455
           PPPPP                     GG PPPP         PP PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 559 PPXXXGGGGGXXPPPPXXXXXXXXXPPPSXP 651
           PP    GG    PPPP         PPP  P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 559 PPXXXGGGGGXXPPPPXXXXXXXXXPPPSXP 651
           PP     GG   PPPP         PPP  P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 517 GGAPPPPXXXXXKKGXPPXPP 455
           G  PPPP       G PP PP
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPP 780


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.4 bits (48), Expect(2) = 3.0
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -1

Query: 508 PPPPXXXXXKKGXPPXPP 455
           PPPP      +  PP PP
Sbjct: 13  PPPPGFEPPSQPPPPPPP 30



 Score = 21.4 bits (43), Expect(2) = 3.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 595 GXPPPPPXXXG 563
           G PPPPP   G
Sbjct: 7   GNPPPPPPPPG 17


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = -1

Query: 589 PPPPPXXXGXGXXXXXXXXXXXKRGGAPPPPXXXXXKKGXPPXP 458
           PPPPP     G            R   PPPP       G  P P
Sbjct: 339 PPPPPRSNAAGSIPLPPQG----RSAPPPPPPRSAPSTGRQPPP 378



 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/45 (28%), Positives = 13/45 (28%)
 Frame = -1

Query: 589 PPPPPXXXGXGXXXXXXXXXXXKRGGAPPPPXXXXXKKGXPPXPP 455
           PPPPP                      PPPP       G  P PP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = -3

Query: 662 FFXXGXEGGGXXXXXXXXXGGGGXXPPPPPXXXGG 558
           F   G  GGG         GGG   PPP P   GG
Sbjct: 180 FHHRGHNGGGFGGF-----GGGSGGPPPGPGGFGG 209


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 22.6 bits (46), Expect(2) = 9.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 598 GGXPPPPP 575
           GG PPPPP
Sbjct: 303 GGLPPPPP 310



 Score = 20.6 bits (41), Expect(2) = 9.5
 Identities = 8/21 (38%), Positives = 8/21 (38%)
 Frame = -1

Query: 508 PPPPXXXXXKKGXPPXPPXKK 446
           PPPP     K    P P   K
Sbjct: 311 PPPPSNDFWKDSNEPAPADNK 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,721,420
Number of Sequences: 5004
Number of extensions: 24929
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)