Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_L20
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   0.041
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.075
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   1.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect(2) = 0.041
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 691  PPPPPPP 671
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 689  PPPPPPP 669
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 619  PPPPPPP 599
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 691  PPPPPPP 671
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 690  PPPPPPP 670
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.8 bits (49), Expect(2) = 0.041
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 619  PPPPPPP 599
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 767  PPPPXPPP 744
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 764  PPPXPPPP 741
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 761  PPXPPPPP 738
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 450  KKKXXXPPPPPP 485
            +++   PPPPPP
Sbjct: 1351 RQQQPPPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect(2) = 0.075
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 767 PPPPXPPPPP 738
           PP P PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 767 PPPPXPPPPP 738
           P P  PPPPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 21.0 bits (42), Expect(2) = 0.075
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 686 PPPPPP 669
           PPPPPP
Sbjct: 343 PPPPPP 348



 Score = 21.0 bits (42), Expect(2) = 2.1
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 616 PPPPPP 599
           PPPPPP
Sbjct: 343 PPPPPP 348



 Score = 20.6 bits (41), Expect(2) = 2.1
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 691 PPPPPPP 671
           P PPPPP
Sbjct: 341 PAPPPPP 347


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect(2) = 1.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 619  PPPPPP 602
            PPPPPP
Sbjct: 1859 PPPPPP 1864



 Score = 20.6 bits (41), Expect(2) = 1.8
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 691  PPPPPPP 671
            P PPPPP
Sbjct: 1857 PEPPPPP 1863


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,069
Number of Sequences: 438
Number of extensions: 8676
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)