Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_L16
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa...    28   1.9  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   7.6  

>SPBC13E7.06 |msd1|mug172|spindle pole body protein
           Msd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 331

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = -1

Query: 360 PHSNSAQIPCKCKRLRSIERIIQYLVQVQLLFNITKFHSLIELKRCF----KNKHVVNLT 193
           P+SN  ++ C+   +    +I   L+ ++ L +  K+ S+ EL        KNKH++N+ 
Sbjct: 255 PNSNPFEV-CELNAILLDAKIQNQLLFIRNLLHERKYVSIDELDAILEENEKNKHLINIL 313

Query: 192 QK 187
           QK
Sbjct: 314 QK 315


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +3

Query: 351  CYEVRVMWTGCGSQKSLSTSREGLVAAFV 437
            C+++   WTG G  ++++ +RE L+ A +
Sbjct: 1047 CWKLLDEWTGFGPARAITKNREELMRAHI 1075


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,251,641
Number of Sequences: 5004
Number of extensions: 66531
Number of successful extensions: 186
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)