Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_L16
(840 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1062 + 23668334-23669644,23670676-23670764,23671494-23671584 33 0.37
05_05_0315 - 24030695-24030787,24030896-24030995,24031120-240312... 31 1.5
01_05_0743 + 24835349-24836009,24836925-24837068,24837154-248373... 30 2.0
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 29 3.5
05_07_0280 - 28920864-28920971,28921076-28921175,28921267-289213... 29 6.1
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677... 29 6.1
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462... 28 8.1
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852... 28 8.1
>07_03_1062 + 23668334-23669644,23670676-23670764,23671494-23671584
Length = 496
Score = 32.7 bits (71), Expect = 0.37
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -2
Query: 461 PVAASRPQYKSSNKALSASR*RFLRPASCPHHPHLIATVHRSHASASDYVQLS 303
P AA+R Q + + ++ R L+P SCP PH +A + + + SD L+
Sbjct: 16 PCAAARSQRRGAGYSMRTIRSALLQPDSCPGSPH-VAAAYDAAGADSDMENLT 67
>05_05_0315 -
24030695-24030787,24030896-24030995,24031120-24031247,
24031350-24031517,24031626-24031741,24031773-24031896,
24032085-24032254,24032255-24032999
Length = 547
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = -1
Query: 372 TSPSPHSNSAQ-IPCKC---KRLRSIERIIQYLVQVQLLFNITKFHSLIELKRCFKNKHV 205
TS H + Q CK ++L + E + +VQ+++++ ++ELK +++KH
Sbjct: 82 TSLCTHKATGQRFACKTISKRKLSTKEDVEDVRREVQIMYHLAGQPGVVELKGAYEDKHA 141
Query: 204 VNLTQKL 184
V+L +L
Sbjct: 142 VHLVMEL 148
>01_05_0743 +
24835349-24836009,24836925-24837068,24837154-24837306,
24837627-24837742,24837826-24837993,24838610-24838737,
24838827-24838926,24839119-24839205
Length = 518
Score = 30.3 bits (65), Expect = 2.0
Identities = 10/33 (30%), Positives = 24/33 (72%)
Frame = -1
Query: 282 QVQLLFNITKFHSLIELKRCFKNKHVVNLTQKL 184
+VQ++ ++T +++EL+ ++++H VNL +L
Sbjct: 114 EVQIMHHLTGHRNIVELRGAYEDRHSVNLIMEL 146
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 537 NINSHSQTCSAEAERTTSAPPPE 469
++ +H Q CSA + TT++PP E
Sbjct: 789 SLQNHRQNCSATSHHTTTSPPTE 811
>05_07_0280 -
28920864-28920971,28921076-28921175,28921267-28921394,
28922013-28922180,28922280-28922395,28922584-28922736,
28922904-28923047,28923401-28924133
Length = 549
Score = 28.7 bits (61), Expect = 6.1
Identities = 9/33 (27%), Positives = 23/33 (69%)
Frame = -1
Query: 282 QVQLLFNITKFHSLIELKRCFKNKHVVNLTQKL 184
+V ++ ++T +++EL+ ++++H VNL +L
Sbjct: 138 EVHIMHHLTGHRNIVELRGAYEDRHSVNLVMEL 170
>02_05_0003 -
24867053-24867145,24867264-24867437,24867673-24867735,
24868108-24868198,24869579-24869673,24870471-24870668,
24871475-24871648,24872335-24872439,24872645-24872737,
24873688-24873690,24874776-24874844,24875208-24875265,
24875810-24875918,24876603-24876714,24877992-24878204,
24878214-24878546
Length = 660
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 534 INSHSQTCSAEAERTTSAPPPEIRACRRISAS 439
+ H + CS A TT PPP + RR SAS
Sbjct: 31 LRPHVRCCSPAAASTTKPPPPPPQDRRRRSAS 62
>08_01_0533 +
4625376-4625709,4625799-4625966,4627428-4627689,
4627787-4627934,4628453-4628496,4628812-4628859,
4629245-4630509,4630741-4630839,4630916-4631097,
4631186-4631246,4631488-4631725,4631818-4631971,
4632042-4632335
Length = 1098
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 683 HVCTVGQQDEPMDIKFLCLNGTVFDQXTXVCER 781
H C EP+ KF+ ++G F++ T +C R
Sbjct: 99 HTCKCLDGFEPVSDKFVYISGISFEECTVLCSR 131
>02_03_0074 +
14781763-14784191,14784888-14784978,14785180-14785230,
14785882-14785947,14786509-14786610
Length = 912
Score = 28.3 bits (60), Expect = 8.1
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = -1
Query: 522 SQTCSAEAERTT----SAPPPEIRACRRISASVQKQQQGPLG*SIAISETRILSTSPSPH 355
S+T S +R T SAPPP A S S Q QQQ P A+ ++SP P
Sbjct: 88 SRTASEHLKRGTCPNFSAPPPGAAAASGSSGS-QHQQQTPQAALQALPPPNSTASSPIPI 146
Query: 354 SNSA 343
S+ A
Sbjct: 147 SSIA 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,747,193
Number of Sequences: 37544
Number of extensions: 449356
Number of successful extensions: 1233
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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