Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_L16
         (840 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    31   1.0  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    31   1.0  
U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    29   5.4  
U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF016430-3|AAB65369.1|  370|Caenorhabditis elegans Hypothetical ...    28   9.5  

>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
           lineage protein 13 protein.
          Length = 2248

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 264 NITKFHSLIELKRCFKNKHVVNLT 193
           NI +FHS++E++  FK KH  N T
Sbjct: 481 NIEEFHSVVEIEEHFKEKHEANHT 504


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
           protein LIN-13 protein.
          Length = 2248

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 264 NITKFHSLIELKRCFKNKHVVNLT 193
           NI +FHS++E++  FK KH  N T
Sbjct: 481 NIEEFHSVVEIEEHFKEKHEANHT 504


>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/65 (29%), Positives = 25/65 (38%)
 Frame = +2

Query: 611 TNFTCAGKVIGGYYADLETSCQMFHVCTVGQQDEPMDIKFLCLNGTVFDQXTXVCERXDE 790
           T  T A K     +  + + C  F  C  G     +   F C NG  F   T +C+R D 
Sbjct: 558 TTTTPAFKCTKDGFFGVPSDCLKFIRCVNG-----ISYNFECPNGLSFHADTMMCDRPDP 612

Query: 791 XNCXK 805
             C K
Sbjct: 613 SKCAK 617


>U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical
           protein ZC155.3 protein.
          Length = 845

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 294 GLYAQLNVIACTCMGSVHCCYEVRVMWTGCGSQKSLSTSREGLVAA 431
           G+Y   N  + TC+   H     +VMWT CG  K     R  + A+
Sbjct: 478 GVYGYNNTTSTTCV-QTHDSARDQVMWTTCGIWKLCQMCRTWIKAS 522


>AF016430-3|AAB65369.1|  370|Caenorhabditis elegans Hypothetical
           protein C05C8.2 protein.
          Length = 370

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 267 TIVAPEPNTGLYAQLNVIACTCMGSVHCCYEVRVM 371
           T+ A  P  GL  Q+N I   CM ++H  Y ++ M
Sbjct: 194 TVCAVGPLAGL-KQINQIVTDCMKNIHPIYNIKTM 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,372,349
Number of Sequences: 27780
Number of extensions: 387823
Number of successful extensions: 1071
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)