Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_L16
         (840 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   3.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   8.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -1

Query: 561  IRNSFWNININSHSQTCSAEAERTTSAPPPEIRACRRISASVQKQQQ 421
            + +S  ++  +S S   +     TT  PP ++++ ++   S Q+QQQ
Sbjct: 941  VLHSAQSVVASSASNVTNVTTNLTTILPPVKVQSQQQSQQSQQQQQQ 987


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 210 HVVNLTQKLPIIFRWK 163
           H  NLT  L +I+ WK
Sbjct: 21  HSRNLTNSLKVIYEWK 36


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 383 ASCPHHPHLIATVHRSHASA 324
           A+ PHH H     H S+ +A
Sbjct: 437 AATPHHQHSTPLAHSSYPAA 456


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 547  KRIPDIEIHSTWLF 588
            KR PD+E    WLF
Sbjct: 992  KRRPDLEYGKVWLF 1005


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 392 LRPASCPHHPHLIATVHRS 336
           L+P+   HH HL + + RS
Sbjct: 279 LQPSLASHHSHLSSALGRS 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,982
Number of Sequences: 438
Number of extensions: 4708
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)