Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_L08
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1147 + 34892415-34893702,34894051-34894676                       32   0.66 
07_03_1747 + 29188568-29188715,29188793-29189541                       31   1.5  
06_03_0757 + 24267599-24268882                                         30   2.0  
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305...    29   3.5  
04_02_0005 - 8439473-8439772,8440145-8440361,8440534-8440598           29   4.7  
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201...    29   6.2  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.2  

>01_06_1147 + 34892415-34893702,34894051-34894676
          Length = 637

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 33/110 (30%), Positives = 45/110 (40%)
 Frame = +1

Query: 94  TSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMIGSTND*V 273
           TS    +D    T+D E P   + +  LT  L   N          L  L+ +  +N+  
Sbjct: 139 TSTLTFLDLSYNTFDGEIPLRVQNLTQLTALLLQNNSLSGPIPDLQLPKLRHLNLSNN-- 196

Query: 274 GTQGNGAAALGWCPRNACGGLTWYC*TRLQPPPGTTLSAPVYLITAPSPG 423
              G    +L   P N+  G  + C   LQP PGT  S P    T+PSPG
Sbjct: 197 NLSGPIPPSLQRFPANSFLGNAFLCGFPLQPCPGTAPS-PSPSPTSPSPG 245


>07_03_1747 + 29188568-29188715,29188793-29189541
          Length = 298

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +1

Query: 364 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 516
           PPP TT++  V L TA +   S   +  QF+C+     TTC  + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260


>06_03_0757 + 24267599-24268882
          Length = 427

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 234 GRSSNDWIDKRLSWN-AGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYA 383
           G SS  W+    SW  AG W C     + ++ WRP    L   A TA DY+
Sbjct: 337 GGSSTGWVANP-SWRPAGPWVCFNPWPAQQQAWRPSSAGLLGPAPTA-DYS 385


>08_02_1291 +
           25930056-25930067,25930289-25930334,25930434-25930546,
           25930645-25930930,25931357-25931421,25931642-25931693,
           25931774-25931883,25932611-25932641,25932853-25933004,
           25934622-25934840
          Length = 361

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 225 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 136
           +GG  L    ++Q  G   Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129


>04_02_0005 - 8439473-8439772,8440145-8440361,8440534-8440598
          Length = 193

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 583 RGM*RICPVRCXXRTVARWXLAWQCSXCLSGXRAPGTRXWRXAPC 717
           +G+ R C V    R   R  L W  S C +  R+PG +  R A C
Sbjct: 146 KGIRRHCDVLAVLR---RRKLGWAASACFNEGRSPGEKIVRGADC 187


>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
            27020254-27020325,27021008-27021061,27021707-27021856,
            27022206-27022547,27022651-27024684,27024706-27024947,
            27025658-27026235,27026329-27028183,27028533-27028851,
            27028980-27029417
          Length = 2126

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 295  QPHSPAFQLSRLSIQSFEDLPVSARWTRT 209
            QP S AF  +R  ++ + D+P  ARW ++
Sbjct: 1094 QPASGAFAYTRYFLKKYRDVPSVARWEKS 1122


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 393 GRGERSPRRWLQPRLAVPRQASTSVPRTP 307
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,668,459
Number of Sequences: 37544
Number of extensions: 481475
Number of successful extensions: 1398
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)