Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_L02
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   217   2e-57
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   211   9e-56
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    40   5e-04
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    29   1.2  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    29   1.2  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    27   3.6  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   8.3  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  217 bits (530), Expect = 2e-57
 Identities = 105/149 (70%), Positives = 117/149 (78%)
 Frame = +2

Query: 179 LGQKMLTSRMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 358
           +G K L  RME YV+KRR+DG H+INL +TWEKLVLAAR +  IENPADV VISSRP+G 
Sbjct: 28  IGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIATIENPADVCVISSRPYGH 87

Query: 359 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPV 538
           RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+IV DP  D Q I EAS+VNIPV
Sbjct: 88  RAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPV 147

Query: 539 IALCNTDSPLRFVDIAIPCNTKSSHSIGL 625
           IALC+TDS L  VD+AIP N K   SIGL
Sbjct: 148 IALCDTDSILNHVDVAIPINNKGYKSIGL 176



 Score = 42.3 bits (95), Expect = 9e-05
 Identities = 16/30 (53%), Positives = 23/30 (76%)
 Frame = +3

Query: 666 GVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 755
           G + R   W+V+ DL+FYRDPEE E++E+Q
Sbjct: 190 GNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  211 bits (516), Expect = 9e-56
 Identities = 100/150 (66%), Positives = 117/150 (78%)
 Frame = +2

Query: 179 LGQKMLTSRMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 358
           +G K L  RM+ YV+KRR+DG H++NL +TWEKLVLAAR +  IENPADV V+S+R +G 
Sbjct: 27  IGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAARVIATIENPADVCVVSTRTYGH 86

Query: 359 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPV 538
           RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL++V DP  D Q I EAS+VNIPV
Sbjct: 87  RAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPV 146

Query: 539 IALCNTDSPLRFVDIAIPCNTKSSHSIGLM 628
           IALC+TDS L  VDIAIP N K   SIGL+
Sbjct: 147 IALCDTDSILNHVDIAIPTNNKGRKSIGLI 176



 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 21/40 (52%), Positives = 28/40 (70%)
 Frame = +3

Query: 666 GVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQAVVPAK 785
           G L R   WDV+ DL+FYRDPEE E+ E++AK+ A   A+
Sbjct: 189 GTLSRSAPWDVMPDLYFYRDPEEVER-EEEAKKAAAAAAE 227


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 25/158 (15%)
 Frame = +2

Query: 209 ETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQR-AVLKFAAH 385
           + ++Y +R +G H+I+L +T   L  A   V +I     + +      GQ+ +V+  A  
Sbjct: 72  QPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGIILFIGTRNGQKDSVVAAAKR 130

Query: 386 TGATPIAGRFTPGAFTN--QIQA----------------------AFREPRLLIVLDPAQ 493
                I  R+ PG  TN  ++Q                       ++  P L+++L+P +
Sbjct: 131 ARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQTDKKPSYVFPDLMVILNPLE 190

Query: 494 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKS 607
           +     EA   ++P I + +TD+  R V   IP N  S
Sbjct: 191 NKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDS 228


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +2

Query: 248 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 424
           V+++R TW +LV+  +  + + N  ++ +I++    +  V+ FA H           PG
Sbjct: 89  VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
 Frame = +2

Query: 383 HTGATPIAGRFTPGAFTNQIQAAFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIAL 547
           +  A P  G       T+ I A F+  +P + ++     D   +   T A    +  + L
Sbjct: 29  YVNAAPHLGHLYSLVLTDAI-ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQL 87

Query: 548 CNTDSPLRFVDIAIPCNTKSSHSI 619
           C+ +S  RF D+A+  NTK +H I
Sbjct: 88  CDRNSK-RFADLAVAANTKFTHFI 110


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = -2

Query: 511 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DD 332
           S GL  L R +   E  F +     +S + W  T +   + G+RG   ++   EGP   D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225

Query: 331 EHISGVLDG 305
            H SGV  G
Sbjct: 226 LH-SGVFGG 233


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 673 FPVTSAGML--WLICSSTVTLKKVKRM 747
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,590,588
Number of Sequences: 5004
Number of extensions: 74794
Number of successful extensions: 197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)