Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_L02
(890 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 207 8e-54
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 207 1e-53
06_03_0871 - 25562767-25563509,25563889-25565776 29 3.8
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 29 3.8
09_06_0103 + 20873310-20873382,20873530-20873735 29 6.6
02_03_0274 - 17183141-17183689 29 6.6
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 8.7
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 207 bits (506), Expect = 8e-54
Identities = 96/150 (64%), Positives = 116/150 (77%)
Frame = +2
Query: 179 LGQKMLTSRMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 358
LG K +ME YVYKRR+DG ++INL +TWEKL LAAR +VAIENP D+ V S+RP+GQ
Sbjct: 29 LGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQ 88
Query: 359 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPV 538
RAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP
Sbjct: 89 RAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPT 148
Query: 539 IALCNTDSPLRFVDIAIPCNTKSSHSIGLM 628
IA C+TDSP+R+VDI IP N K +SIG +
Sbjct: 149 IAFCDTDSPMRYVDIGIPANNKGRNSIGCL 178
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = +3
Query: 669 VLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQ 767
+LP +WDV+VDLFFYRDPEE+++ E++A Q
Sbjct: 193 ILP-GHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 97 SATXSGGXXVLALNXEAVTKMLAATTHLGAENVNFQ 204
+A G L+ + V MLAA HLG +N +FQ
Sbjct: 2 AAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQ 37
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 207 bits (505), Expect = 1e-53
Identities = 96/150 (64%), Positives = 114/150 (76%)
Frame = +2
Query: 179 LGQKMLTSRMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 358
LG K +ME YVYKRR DG ++INL +TWEKL LAAR +VAIENP D+ V S+RP+GQ
Sbjct: 29 LGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQ 88
Query: 359 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPV 538
RAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP
Sbjct: 89 RAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPT 148
Query: 539 IALCNTDSPLRFVDIAIPCNTKSSHSIGLM 628
IA C+TDSP+R+VDI IP N K SIG +
Sbjct: 149 IAFCDTDSPMRYVDIGIPANNKGKQSIGCL 178
Score = 44.8 bits (101), Expect = 9e-05
Identities = 21/36 (58%), Positives = 29/36 (80%)
Frame = +3
Query: 669 VLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQAVV 776
+LP +WDV+VDLFFYRDPEE++ EQ+ +E A+V
Sbjct: 193 ILP-GHKWDVMVDLFFYRDPEEAK--EQEEEEAALV 225
>06_03_0871 - 25562767-25563509,25563889-25565776
Length = 876
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = -3
Query: 720 GRRTNQPQHPSAGHGEAHHEASTLHVPTTTTIKPIEWE-----DLVLHGIAMSTNLSGES 556
GR T PQH S H HH+A+ P T+ ++ + + +L A +G S
Sbjct: 497 GRST--PQHHSKKHDHPHHQAAAA-PPAPATLVTVDGDGELEMETLLKASAYILGATGSS 553
Query: 555 VLHKAI 538
+++KA+
Sbjct: 554 IVYKAV 559
>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 29.5 bits (63), Expect = 3.8
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -3
Query: 690 SAGHGEAHHEASTL--HVPTTTTIKPIEWEDLVLHGIAMSTNLSGESVLHKAITGMLTYE 517
S+ H E A L H T + + + L LH A S N ES LH+A+ E
Sbjct: 1315 SSTHAEKEEAAEKLAVHERTISHLTEVHTRSLELHSAAESKNEEIESKLHEALEMAAQKE 1374
Query: 516 ASV 508
A V
Sbjct: 1375 AEV 1377
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +1
Query: 373 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 480
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>02_03_0274 - 17183141-17183689
Length = 182
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -3
Query: 732 LQGHGRRTNQPQHPSAGHGEAH-HEASTLHVPTTTTIKPIEWEDLVLHGIAMSTNLSGES 556
L R + P+A G H + +T H PTT T P ++ +H +TN GES
Sbjct: 4 LSASPRPRRRRMDPTAHLGRHHASDLATPHPPTTPT-SPSNTNNIHIHPFTRATNQFGES 62
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -1
Query: 377 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 222
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,942,169
Number of Sequences: 37544
Number of extensions: 580117
Number of successful extensions: 1622
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1622
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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